Alignments for a candidate for trpD_2 in Desulfobacca acetoxidans DSM 11109

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (uncharacterized)
to candidate WP_013707626.1 DESAC_RS13440 anthranilate phosphoribosyltransferase

Query= curated2:A3D628
         (357 letters)



>NCBI__GCF_000195295.1:WP_013707626.1
          Length = 385

 Score =  174 bits (440), Expect = 5e-48
 Identities = 121/356 (33%), Positives = 182/356 (51%), Gaps = 23/356 (6%)

Query: 13  LYQGKSLSREQTAELFGALIRGEMSEAAMAGMLVALKMRGETIDEISGAADAMRAAAKPF 72
           L QG+ LSRE+T EL+  ++  E  +      L A   +  T+DEI+GA +A        
Sbjct: 22  LAQGQHLSREETKELYRQILLAEQPDLQQGAFLAAHMAKSPTLDEIAGAWEAQMDYDV-- 79

Query: 73  PCPERNNNPLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSS 132
              E  + PL     DIVGTG D   T+N S+ AA +AAAAGA VAK G R+ +  SG+S
Sbjct: 80  ---ETIDPPLPGPCADIVGTGSDYLKTLNASSGAAILAAAAGAYVAKKGARAATGVSGAS 136

Query: 133 DLLAQFGIDLTMSPETASRCLDALNLCFLFAPHY-HGGVKHAVPVRQALKTRTLFNVLGP 191
           D+   FG+DL      A++ L A  LC++    +   G    + V   ++ RT+FN+  P
Sbjct: 137 DIFETFGVDLKAPLSQAAQALTAHRLCYIPGERFLRSGWGRLIAV---MRFRTIFNLACP 193

Query: 192 LINPARP-EFMLLGVYSPELVLPIAKVLKALGTKRAMVVHG--------SGLDEVALHGN 242
           L+ P RP  ++++G YS +L   +  + + +G   A+ ++G         G+DEV++ G 
Sbjct: 194 LLLPCRPTRYLVIGAYSADLARQLVNICREIGLAGALGLYGQSDQHEPDQGMDEVSVCGP 253

Query: 243 TQVAELKDGDIIEYQLTPADLGV---PLAQISDLEGGEPAQNALITEAILKGRGTEAHAN 299
           T V EL+   I EY L P DLG+   P  +I+    G+  QNAL    +L      A A+
Sbjct: 254 TLVVELRHDQITEYVLEPEDLGLRRYPYEKIA--AQGDTYQNALALLKVLSAGTNGAAAD 311

Query: 300 AVAINAGCALYVCGITDSVKAGTLLALATIQSGKAFELLSQLAKVSGEALVNGQER 355
            +A NA   LY+  +  S  A    A  T+ +GKA + L  L  V      +G+E+
Sbjct: 312 FLAANAAAVLYLLNLAPSWPAAVEQARQTLAAGKALDTLRSLVAVQQGNSRHGEEK 367


Lambda     K      H
   0.317    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 385
Length adjustment: 30
Effective length of query: 327
Effective length of database: 355
Effective search space:   116085
Effective search space used:   116085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_013707626.1 DESAC_RS13440 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.26997.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26997.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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