Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_013707829.1 DESAC_RS14600 3-isopropylmalate dehydratase small subunit
Query= BRENDA::Q58673
(168 letters)
>NCBI__GCF_000195295.1:WP_013707829.1
Length = 164
Score = 179 bits (455), Expect = 2e-50
Identities = 83/160 (51%), Positives = 118/160 (73%)
Query: 5 IKGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFG 64
++G+ KFGN++DTDAI+PARYL + +ELA+ M ADP+F K+ + GD I+ GKNFG
Sbjct: 3 LRGKAHKFGNDIDTDAIIPARYLNTSDSQELAKHAMEDADPEFVKQAQVGDFIIAGKNFG 62
Query: 65 CGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNL 124
CGSSREHAP+ LK AG+S VIA SFARIFYRNA N+GLP+ E ++++ G ++ V+L
Sbjct: 63 CGSSREHAPIALKAAGLSGVIAGSFARIFYRNAFNMGLPIFESAAAAQEIQAGHDVSVDL 122
Query: 125 ETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKM 164
++G I +LTTG+ Q LP FM +++ GGL+ ++ KK+
Sbjct: 123 DSGIITDLTTGKTYPSQPLPPFMQQLIADGGLISHIMKKL 162
Lambda K H
0.317 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 164
Length adjustment: 18
Effective length of query: 150
Effective length of database: 146
Effective search space: 21900
Effective search space used: 21900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)
Align candidate WP_013707829.1 DESAC_RS14600 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)
../bin/blast/fastacmd -i /tmp/list.12078.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12078.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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