Alignments for a candidate for asd in Desulfobacca acetoxidans DSM 11109

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_013707831.1 DESAC_RS14610 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000195295.1:WP_013707831.1
          Length = 339

 Score =  356 bits (914), Expect = e-103
 Identities = 188/341 (55%), Positives = 243/341 (71%), Gaps = 8/341 (2%)

Query: 1   MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60
           M+++FNVA+ GATGAVG  M++ L+ER FPV+ L  LASERS GK+  F+G+ + V+ + 
Sbjct: 1   MARKFNVAVAGATGAVGTQMVQCLEERNFPVELLRPLASERSLGKSVSFHGQEIPVEVLN 60

Query: 61  EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120
           E  +  + IALFSAGG +S K+ PIAA +G VV+DN+S FR + DIPLVVPEVNP+ IA 
Sbjct: 61  ENSFVGIDIALFSAGGSVSLKYGPIAAASGAVVVDNSSAFRMEPDIPLVVPEVNPDDIAL 120

Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180
           ++NR IIANPNCSTIQM+VALKPI+DA  ++R+ V+TYQ+VSG G+  + ELA Q   LL
Sbjct: 121 YKNRGIIANPNCSTIQMVVALKPIHDAARLKRVVVSTYQAVSGTGQKAVTELAAQVRALL 180

Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240
           +G  AE   +  +IAFN  P ID F++NG+TKEEMKMV ET+KI  D SI V  T  RVP
Sbjct: 181 SGQEAEAKVYPYRIAFNVFPHIDVFLENGFTKEEMKMVNETKKIMGDDSIRVCATTARVP 240

Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPT-----QVRDAGGKDHVLV 295
           VFYGH+EAV++ET   I  + V  +L Q  G+++    D P         DA G+D  LV
Sbjct: 241 VFYGHSEAVNIETERKISPDDVRALLAQAPGVKV---VDDPANRLYPMPLDAAGQDLTLV 297

Query: 296 GRVRNDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
           GR+R D S  +GI LW+VADN+RKGAATNAVQIAE+L   Y
Sbjct: 298 GRIRQDTSVENGIVLWIVADNIRKGAATNAVQIAEILAEKY 338


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 323
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 339
Length adjustment: 28
Effective length of query: 309
Effective length of database: 311
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_013707831.1 DESAC_RS14610 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.26616.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26616.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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