Alignments for a candidate for argG in Methylomonas methanica MC09

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_013820296.1 METME_RS18660 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000214665.1:WP_013820296.1
          Length = 402

 Score =  490 bits (1262), Expect = e-143
 Identities = 237/393 (60%), Positives = 299/393 (76%), Gaps = 3/393 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTS+ILKWL++ Y+ EV+ FTADIGQGEE+E AR KA   G  +    DL
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDVYQCEVVTFTADIGQGEELEPARAKATAAGIKEIYIDDL 65

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEF RDF+FPM RA  +YEG YLLGTSIARPLIAK L+ IA E GA+ I+HGATGKGND
Sbjct: 66  REEFARDFIFPMFRANTIYEGEYLLGTSIARPLIAKRLIEIANETGADTISHGATGKGND 125

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK--PYSMDANLL 179
           QVRFEL AYAL+PDIK+IAPWREW    R++++ YAE HGI V + + K  PYSMDAN L
Sbjct: 126 QVRFELGAYALRPDIKIIAPWREWDLNSRQKLLDYAEKHGISVEMKKGKTSPYSMDANSL 185

Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239
           HISYEG +LE+PW EP + M+R T  PE APD   YVE+ +  GD VA++    +P  ++
Sbjct: 186 HISYEGRILENPWTEPEEDMWRWTVSPENAPDQATYVELSYQNGDIVAIDDVPHTPHQVM 245

Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299
           ++LN++ G +GVGR+DIVENR+VGMKSRG YETP GT++  A RA+ESLTLDREV H +D
Sbjct: 246 EKLNQVAGANGVGRLDIVENRYVGMKSRGCYETPAGTVMMKAHRAIESLTLDREVAHLKD 305

Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYR 359
            L P+YA L+Y G+W++PER  LQ   D    +V G  R+KLYKGNV VVGR +  SL+ 
Sbjct: 306 ELMPRYASLIYNGYWWSPERAMLQTMIDTSQANVNGKVRVKLYKGNVIVVGRASDNSLFD 365

Query: 360 QDLVSFDEAGG-YDQKDAEGFIKIQALRLRVRA 391
           +++ +F+E GG Y+QKDAEGFIK+ ALR+R+ A
Sbjct: 366 ENIATFEEDGGAYNQKDAEGFIKLNALRMRIAA 398


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 402
Length adjustment: 31
Effective length of query: 369
Effective length of database: 371
Effective search space:   136899
Effective search space used:   136899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_013820296.1 METME_RS18660 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.8309.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8309.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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