Alignments for a candidate for proB in Thiomicrospira cyclica ALM1

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_013834728.1 THICY_RS00875 glutamate 5-kinase

Query= reanno::Korea:Ga0059261_3512
         (367 letters)



>NCBI__GCF_000214825.1:WP_013834728.1
          Length = 373

 Score =  232 bits (592), Expect = 1e-65
 Identities = 148/365 (40%), Positives = 212/365 (58%), Gaps = 10/365 (2%)

Query: 11  RLVVKIGSALLVDPEGAIRRDWLEGIAADIAARVRAGQQIAVVSSGAIALGARRLKLAKG 70
           R V+K+GSALL +    + +  L    A +      G ++ +VSSGA+A G +RL   K 
Sbjct: 11  RWVIKLGSALLTNDGSGLNQTELAKWVAQMVLLRNQGVELIIVSSGAVAEGMQRLGW-KT 69

Query: 71  GRASLEDAQAAAATGQIALSQVWAEVLAANGLTAAQMLVTLDDLEDRRRYLNAAATLGRL 130
              +L + QAAAA GQ+ L Q +    A +GL  AQ+L+T DDL +R RYLNA +T+  L
Sbjct: 70  RPTALNELQAAAAVGQMGLVQAYESEFAKSGLHTAQILMTHDDLSNRARYLNARSTIQTL 129

Query: 131 LSLGVVPVINENDSVATAEIRFGDNDRLAARVAQAADASGVVLLSDIDGLYDRNP-ALPG 189
           +  GV+PVINEND+V T EIRFGDND LAA  A    A  +V+L+D  GLYD NP   P 
Sbjct: 130 VEHGVIPVINENDTVVTDEIRFGDNDTLAALTANLIGADVLVILTDQQGLYDSNPRENPQ 189

Query: 190 AVHIPVVERIDGRVEGMADRGSASGMGSGGMVSKIEAARIAASAGVSLAIANGR----VD 245
           A  I   +     +E MA       +G GGM +K+ AA+ AA +G +  IA+GR    + 
Sbjct: 190 AQLIKQAQVSRKDIEAMAS-PLGGALGRGGMYTKVMAAKRAARSGTATLIASGREADILP 248

Query: 246 RPLSADARHTVFLPE-KRTRARKAWLAGRLTAKGSIIVDAGAAQAL-TEGRSLLAIGATA 303
           +  + +   T+ +P+ +   ARK WLAG L  +G + +D GAA+ +   G+S+L +G  A
Sbjct: 249 KLFAGEDYGTLLVPDLEPMTARKQWLAGHLQVRGQLTLDDGAAKVVRAHGKSVLPVGVVA 308

Query: 304 IRGMFFRGDLVT-IEGPNGPIARGLSEYDAPDAQAILGTRSDDQGEILGYAPRSTLVHRN 362
           + G F RGD+V  ++     +ARGL  YD  +AQ IL   S    EILGY    +L+HR+
Sbjct: 309 LSGQFKRGDMVVCVDQQQHEVARGLVNYDWDEAQRILRQPSTKIAEILGYVDDESLIHRD 368

Query: 363 HMALL 367
           ++ +L
Sbjct: 369 NLVVL 373


Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 297
Number of extensions: 12
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 373
Length adjustment: 30
Effective length of query: 337
Effective length of database: 343
Effective search space:   115591
Effective search space used:   115591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_013834728.1 THICY_RS00875 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.32098.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32098.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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