Align acetohydroxy-acid synthase small subunit (EC 2.2.1.6) (characterized)
to candidate WP_013840791.1 DESRU_RS03735 acetolactate synthase small subunit
Query= metacyc::MONOMER-11901
(169 letters)
>NCBI__GCF_000215085.1:WP_013840791.1
Length = 171
Score = 150 bits (378), Expect = 1e-41
Identities = 74/161 (45%), Positives = 113/161 (70%)
Query: 5 HIISVLVLNKPGVLQRISGLFTRRWYNISSITGGSTDSTDISRMTIVVKGDDKVVEQVVK 64
H ++VLVLNKPGVL RISGL +RR +NI SI G T+ +I+R+T+VV+GDD ++ QVVK
Sbjct: 3 HSLAVLVLNKPGVLARISGLLSRRMFNIESIAAGYTEDPNITRITLVVQGDDHILYQVVK 62
Query: 65 QLNKLIEVIKVIDLDEEECVERELCLIKIYAPTESSKSQVIQYANIFRGNIVDLSQESLT 124
QL+KL++VIK+ +L + + REL LIK+ A S ++ ++ +IFR ++VD+++E++
Sbjct: 63 QLSKLVDVIKIHELAVSDSINRELALIKVRADDPSRRADIVNIVDIFRASVVDVNRETMV 122
Query: 125 VQITGDKTKISAFIKLVKPMGIKEISRTGLTALMRGPKILK 165
+++TG + KI A ++ GI E+ RTG L RGP K
Sbjct: 123 IELTGTEEKIDALCGVLGEHGIVEMVRTGKICLDRGPGAAK 163
Lambda K H
0.317 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 171
Length adjustment: 18
Effective length of query: 151
Effective length of database: 153
Effective search space: 23103
Effective search space used: 23103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)
Align candidate WP_013840791.1 DESRU_RS03735 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.14717.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14717.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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