Alignments for a candidate for asp-kinase in Pyrolobus fumarii 1A

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_014026853.1 PYRFU_RS06440 aspartate kinase

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_000223395.1:WP_014026853.1
          Length = 480

 Score =  279 bits (713), Expect = 2e-79
 Identities = 175/471 (37%), Positives = 268/471 (56%), Gaps = 24/471 (5%)

Query: 4   VMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDI- 62
           V KFGG+ + SGE     A+I T+  + +  V++VVSAM  VT+ L+ ++      RD  
Sbjct: 19  VAKFGGSVLKSGEDYARAAEI-TEELQREHSVILVVSAMKGVTDRLLRLA------RDFE 71

Query: 63  AKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSR 122
           A     I  + + H +A+  A  S  +  E    I   I+EL K++  +  LGE+TPK+ 
Sbjct: 72  ASPSVEIPELYQMHVEALRGAGVSGRLFGEAFSRIARLIDELTKIIWALRVLGEVTPKAL 131

Query: 123 DYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----VKERL 178
           DY++SFGERLS+ I+   +R  G ++ AL G EAGI+TD+ FG A     E    V+ RL
Sbjct: 132 DYVVSFGERLSAVIMEAVLRSRGIEAKALTGWEAGIVTDDRFGEANPIMEETVPRVRSRL 191

Query: 179 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 238
           LPL ++GI+P+VTGFI  T +G ITTLGRGGSDY+A+LI   L A  +  +TDV GV T 
Sbjct: 192 LPLTEKGIVPIVTGFIAATRKGDITTLGRGGSDYTASLIASILGATEVHFYTDVPGVMTA 251

Query: 239 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLI 298
           DPRL+P AR IP+L  IEA+EL+  G K  HPRT EP +   I   + +  +P    T++
Sbjct: 252 DPRLIPEARTIPRLCVIEALELSRVGGKKFHPRTFEPLLYSKIRARILDAKDPHGPHTIV 311

Query: 299 TNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE 358
             + E  D++ KA++ ++ +A++ + GA M G  GTA  +        VN++ ISQ  +E
Sbjct: 312 --EPECIDTL-KAVAVMRGLAVVRLEGAVMAGRIGTAMMVTSVSKRAGVNIVAISQPVTE 368

Query: 359 TNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAK 418
           T I +VV+EED ++  KAL  E          N  L  +V V+  +  +++VG G+R   
Sbjct: 369 TRIEIVVAEEDAERLAKALSEE--------IRNQELDVNVMVETGLSAVTIVGYGLRNPS 420

Query: 419 GIAGKIFTAVS-ESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFI 468
             A  +  A+S E    ++ I  G  + +++ V + +D +    ++H + +
Sbjct: 421 LRARVLSEALSLEPEPELRSITTGFHDASLTIVTNARDAVRIAERIHSRLL 471


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 541
Number of extensions: 29
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 480
Length adjustment: 33
Effective length of query: 440
Effective length of database: 447
Effective search space:   196680
Effective search space used:   196680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_014026853.1 PYRFU_RS06440 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.19764.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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