Alignments for a candidate for thrC in Methylotuvimicrobium alcaliphilum 20Z

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_014148043.1 MEALZ_RS07615 threonine synthase

Query= BRENDA::O66740
         (352 letters)



>NCBI__GCF_000968535.2:WP_014148043.1
          Length = 364

 Score =  402 bits (1034), Expect = e-117
 Identities = 198/355 (55%), Positives = 263/355 (74%), Gaps = 7/355 (1%)

Query: 3   RWQGIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSF 62
           R+ G+I+ Y+  LPV ++T +++L EGNTPLI+  N+ R IG    IY+K+EGLNPTGSF
Sbjct: 6   RYTGLIETYRDRLPVADDTRLISLGEGNTPLIQLQNIPRLIGKDVDIYVKFEGLNPTGSF 65

Query: 63  KDRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQA 122
           KDRGMT+A++KAVE G +A+ICASTGNTSASAAAYA RAG++A+VL+P+G +A+GKL+Q 
Sbjct: 66  KDRGMTMAVTKAVEEGSQAIICASTGNTSASAAAYAVRAGIKAFVLIPEGKIALGKLAQT 125

Query: 123 MIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPD 182
           ++YGAK++ I G FD  + +V++I ++ PV IVNS+NP+R+EGQKTAAFEI D LG APD
Sbjct: 126 LMYGAKIIQINGNFDQGMALVKEIVDHAPVSIVNSINPFRLEGQKTAAFEIIDELGTAPD 185

Query: 183 YHFIPVGNAGNITAYWKGFKIYYEE-----GKITKLPRMMGWQAEGAAPIVKGYPIKNPQ 237
           YH +PVGNAGNI+AYWKG+K Y  +         K P M G+QA GAAP +    I +P+
Sbjct: 186 YHCLPVGNAGNISAYWKGYKEYSTDIGSLKAVTNKRPVMCGYQAAGAAPFIAREMIDHPE 245

Query: 238 TIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVA 297
           T+ATAI+IG P SW  A  A +ES G   A++D +IL A KL++S EGVFCEPASAAS+A
Sbjct: 246 TVATAIRIGRPQSWDLAWTAQRESEGWFAAMTDEQILAAQKLLSSNEGVFCEPASAASLA 305

Query: 298 GLIKLVREGFFKGGEVVTCTLTGNGLKDPDTAIKVCEE--PITVPPDFDEVVKVL 350
           G +  +  G    G  + CTLTGNG+KDPD AIK C++  P+T+  D D V K +
Sbjct: 306 GALHDIELGNIPEGSTIVCTLTGNGIKDPDIAIKQCKDAHPVTIEADLDAVKKAI 360


Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 431
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 364
Length adjustment: 29
Effective length of query: 323
Effective length of database: 335
Effective search space:   108205
Effective search space used:   108205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_014148043.1 MEALZ_RS07615 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.6511.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6511.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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