Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_014148283.1 MEALZ_RS08835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
Query= SwissProt::P0A6F1
(382 letters)
>NCBI__GCF_000968535.2:WP_014148283.1
Length = 377
Score = 514 bits (1325), Expect = e-150
Identities = 256/376 (68%), Positives = 299/376 (79%), Gaps = 3/376 (0%)
Query: 1 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
M K ALLVLEDG+ F+G +IG G +VGEVVFNTS+TGYQEIL+DPSY+RQIVTLTYPHI
Sbjct: 1 MSKPALLVLEDGSVFNGVSIGVDGCSVGEVVFNTSLTGYQEILSDPSYARQIVTLTYPHI 60
Query: 61 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
GNVGTN D+ESS V A GLVIR+LPL ASN+R + L YL N+VAIA+IDTRKLTR
Sbjct: 61 GNVGTNMEDDESSSVCASGLVIRNLPLQASNWRCEKTLQEYLIDRNVVAIAEIDTRKLTR 120
Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180
LLR+KGAQ G +IAGDN D +A + AFPGL GMDLAK VT ++Y WT+ W L G
Sbjct: 121 LLRDKGAQRGAVIAGDNADVEIAKKAIAAFPGLKGMDLAKIVTVDKSYEWTEDVWDLDKG 180
Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240
A L HVVA+DFG KRNILR+L +RGCR+T+VPAQT AE VL MNPDG+FLSN
Sbjct: 181 YQSATN---LTKHVVAFDFGIKRNILRLLANRGCRVTVVPAQTPAEKVLAMNPDGVFLSN 237
Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300
GPGDP PCDYAI AI+K L+T +PVFGICLGHQLLALASGAKT KMKFGHHG NHPV+D+
Sbjct: 238 GPGDPEPCDYAIEAIKKILDTKVPVFGICLGHQLLALASGAKTEKMKFGHHGANHPVQDL 297
Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360
VMI++QNHGFAV+EA+LP +L+ T +SLFDG+LQGI RTD PAF FQGHPEASPGP
Sbjct: 298 ATGRVMISSQNHGFAVNEASLPIHLKATFRSLFDGSLQGIERTDCPAFGFQGHPEASPGP 357
Query: 361 HDAAPLFDHFIELIEQ 376
D LFD F++++ Q
Sbjct: 358 QDVESLFDRFVDMMNQ 373
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 500
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 377
Length adjustment: 30
Effective length of query: 352
Effective length of database: 347
Effective search space: 122144
Effective search space used: 122144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_014148283.1 MEALZ_RS08835 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.27119.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27119.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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