Alignments for a candidate for cmutase in Methylotuvimicrobium alcaliphilum 20Z

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_014148952.1 MEALZ_RS12220 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000968535.2:WP_014148952.1
          Length = 361

 Score =  384 bits (985), Expect = e-111
 Identities = 197/365 (53%), Positives = 251/365 (68%), Gaps = 4/365 (1%)

Query: 1   MSEADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWV 60
           M+    L  LR RID++DE+IL LI++RA CA EVA+ K A   + E   FYRP+RE+ V
Sbjct: 1   MTSITPLADLRARIDAIDEQILQLINQRASCAIEVAKTKMA---EGESGCFYRPDRESLV 57

Query: 61  LKHIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVI 120
           L+ +  LN+GPL +E   R FRE+MS+CLALE+PL VA+LGPEGTF+Q AA+KHFGH+V 
Sbjct: 58  LRRVKALNQGPLADETAMRFFRELMSACLALEKPLDVAFLGPEGTFTQQAAIKHFGHAVN 117

Query: 121 SKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHL 180
           + P   I E+F  V      FGVVPVENSTEG VNHTLD F+   + ICGEVELR+HH+L
Sbjct: 118 AVPAMTIAEIFNAVENEHCQFGVVPVENSTEGVVNHTLDRFVSSPLKICGEVELRVHHNL 177

Query: 181 LVGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIA 240
            +G       I  ++SH QSLAQCR+WLD H P+ +R AV+SN +AA+      + AAIA
Sbjct: 178 -IGNAGSLADIAEVFSHQQSLAQCRQWLDLHLPDAKRTAVNSNGEAARLAAGSKDKAAIA 236

Query: 241 GDMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELL 300
           G  AA+LYGLS +   IED   N+TRF+IIG Q   PTG DKTS++VS  N+PGAL+ +L
Sbjct: 237 GKFAAELYGLSVIERNIEDESNNTTRFIIIGRQISGPTGKDKTSLLVSTGNQPGALYRVL 296

Query: 301 MPFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSY 360
            PF  +GI +  IE+RPSR G W YVFFID  GH +D  +   L+ +G     L +LGSY
Sbjct: 297 EPFAHHGIGMMHIESRPSRQGLWDYVFFIDIEGHAEDENVAAALKMLGARVSMLNILGSY 356

Query: 361 PKAVL 365
           PKAVL
Sbjct: 357 PKAVL 361


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 361
Length adjustment: 29
Effective length of query: 336
Effective length of database: 332
Effective search space:   111552
Effective search space used:   111552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_014148952.1 MEALZ_RS12220 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15496.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15496.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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