Alignments for a candidate for leuC in Leptospirillum ferrooxidans C2-3

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_014449007.1 LFE_RS04110 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000284315.1:WP_014449007.1
          Length = 465

 Score =  602 bits (1552), Expect = e-177
 Identities = 296/464 (63%), Positives = 361/464 (77%), Gaps = 1/464 (0%)

Query: 1   MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60
           M +TL EK++D HVV E++  T LLYIDR LVHEVTSPQAF+GL+  GR V +P  T A 
Sbjct: 1   MGRTLLEKIWDDHVVTESDGST-LLYIDRQLVHEVTSPQAFEGLKIAGRAVHRPQATLAV 59

Query: 61  MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP 120
            DHNV T  +       ++ +Q++ L KN  E+ V ++ ++   QG+VHV+ PEQG TLP
Sbjct: 60  PDHNVPTTGRKKGIEDPISALQVETLTKNAMEYSVPIFTMDDIRQGVVHVIAPEQGFTLP 119

Query: 121 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA 180
           GMTIVCGDSHT+THGAFGALAFG+GTSEVEHV+ATQTL Q + K+  I+V G    G T+
Sbjct: 120 GMTIVCGDSHTSTHGAFGALAFGVGTSEVEHVMATQTLIQKKPKSFLIKVNGHLPKGSTS 179

Query: 181 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF 240
           KD++L IIG+ G+ GGTG+V+EF GEA+R+LSME RMTLCNMAIE GA+AG++A DE TF
Sbjct: 180 KDLILYIIGQIGTDGGTGYVLEFSGEAVRELSMEARMTLCNMAIEAGARAGMIAADEVTF 239

Query: 241 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV 300
           +Y+KGR  APKG  ++ AV+ WK+L +D  A +D V+ + A  I PQ+TWGTNPG V+ V
Sbjct: 240 SYIKGRPMAPKGDLWEKAVSSWKSLHSDPDAKYDRVLEIDATRIEPQITWGTNPGMVLPV 299

Query: 301 NDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE 360
             +IP P SF D V + +A+ AL YMGL+PG PL+E++ID+VFIGSCTN RIEDLRAAA 
Sbjct: 300 TGSIPSPESFKDEVSKENAKNALKYMGLEPGTPLSEISIDRVFIGSCTNGRIEDLRAAAS 359

Query: 361 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP 420
           I KGRKV+P V A+VVPGSG V  QAE EGLDKIF+EAGFEWR PGCSMCL MN D+L P
Sbjct: 360 IIKGRKVSPSVNAMVVPGSGLVGQQAEKEGLDKIFLEAGFEWREPGCSMCLGMNPDQLLP 419

Query: 421 GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRN 464
           GERCASTSNRNFEGRQGRGGRTHLVSP MAAAAA+TGHF DIRN
Sbjct: 420 GERCASTSNRNFEGRQGRGGRTHLVSPEMAAAAAITGHFVDIRN 463


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 751
Number of extensions: 25
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 465
Length adjustment: 33
Effective length of query: 433
Effective length of database: 432
Effective search space:   187056
Effective search space used:   187056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_014449007.1 LFE_RS04110 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.4006.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4006.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.