Alignments for a candidate for asp-kinase in Leptospirillum ferrooxidans C2-3

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_014449307.1 LFE_RS05800 aspartate kinase

Query= SwissProt::C3JXY0
         (413 letters)



>NCBI__GCF_000284315.1:WP_014449307.1
          Length = 417

 Score =  453 bits (1165), Expect = e-132
 Identities = 238/407 (58%), Positives = 309/407 (75%), Gaps = 3/407 (0%)

Query: 1   MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGD 60
           MALIVQKFGGTSVGS+ERI  VA  V+K   +GD +VVV+SAM+GET+RL+ LA  +S D
Sbjct: 1   MALIVQKFGGTSVGSIERIRLVAGIVQKTLSSGDQVVVVVSAMAGETDRLVKLAHELSPD 60

Query: 61  QQPLPRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQIDD 120
             P  RE+D+++S+GE+VT ALLA+ LN  G+PA S TG QV I TD+ HTKARI  I  
Sbjct: 61  --PPEREMDMLMSSGERVTSALLAICLNNMGIPARSMTGRQVGIKTDNVHTKARIESISS 118

Query: 121 QKIRTDLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGV 180
           + +   L+AG V +VAGFQG+  Q N+TTLGRGGSDTT VA+A A+ A  C IYTDV GV
Sbjct: 119 EPLAQSLEAGIVPIVAGFQGISPQENVTTLGRGGSDTTAVAIAVAIGAQRCDIYTDVTGV 178

Query: 181 YTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKEGPGT 240
           +TTDP +V  A+++D+I +EEMLEMASLG+KVLQ R+VEFA KY +P+RV  +F + PGT
Sbjct: 179 FTTDPNLVPQARKIDRIAYEEMLEMASLGAKVLQTRSVEFAMKYKMPVRVRSTFSDDPGT 238

Query: 241 LITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANIEVDMIVQNV 300
           L+T +EE+ MEQ ++SG+  ++++AK+T+  VPD PG+A ++   ISG +I VDMIVQN+
Sbjct: 239 LVT-EEEKGMEQIVVSGVTLDKNQAKITVSDVPDRPGLAARLFEDISGHSIIVDMIVQNI 297

Query: 301 SHDNTTDFTFTVHRNEYDAAERILQNTAKEIGAREVVGDTKIAKVSIVGVGMRSHAGVAS 360
             D  TD +FTV R+E   AERI  + +KEIGA E+     I K+SIVGVGMRSH+GVA+
Sbjct: 298 GQDQMTDISFTVPRSESRKAERIALDFSKEIGAGEIRVKEDIVKISIVGVGMRSHSGVAA 357

Query: 361 RMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 407
           RMF ALAKE INI MISTSEIK+S +IE++Y EL+VR LH  FEL++
Sbjct: 358 RMFSALAKEGINIVMISTSEIKISCLIEDRYAELSVRTLHKEFELES 404


Lambda     K      H
   0.316    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 417
Length adjustment: 31
Effective length of query: 382
Effective length of database: 386
Effective search space:   147452
Effective search space used:   147452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_014449307.1 LFE_RS05800 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.29747.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29747.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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