Alignments for a candidate for asd in Leptospirillum ferrooxidans C2-3

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_014450628.1 LFE_RS12725 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_000284315.1:WP_014450628.1
          Length = 350

 Score =  315 bits (808), Expect = 8e-91
 Identities = 164/339 (48%), Positives = 236/339 (69%), Gaps = 13/339 (3%)

Query: 5   LHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEA-SPES 63
           L V + GATGAVG++M+  LE+R F +  L L +++RSAG KV+FKG+ +TV    +PE 
Sbjct: 7   LCVGIFGATGAVGKEMISILEERRFPVGELRLFATERSAGEKVSFKGRTITVSSFDNPEK 66

Query: 64  FEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEH-- 121
            +G++IAL SAG + S  ++P    +G +VIDN+SAFRMD N PLVVPE+N + +  +  
Sbjct: 67  AKGIHIALLSAGATPSLEISPILRDQGILVIDNSSAFRMDPNVPLVVPEINPSKIPAYPA 126

Query: 122 NGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKE 181
             I+ANPNC+TIQM+ A++P+    G  +++V+T+Q+VSG G +A+ EL +Q   ILN  
Sbjct: 127 GAIVANPNCATIQMLLAIKPLIDCAGAKRIVVTTFQSVSGTGKDAMDELTTQLSLILNGR 186

Query: 182 --EIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAA 239
             ++ P++ P       +QIAFN +P ID F  +GYT EE KM+NET+KI+ M D++V A
Sbjct: 187 IGDVAPKVYP-------HQIAFNVLPHIDSFLPDGYTKEEEKMVNETRKILDMADIRVTA 239

Query: 240 TCVRLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKN 299
           T VR+P+  GHSE+V IE +RD  + E  + +L++APGV + D+PS   YP+P D  G++
Sbjct: 240 TTVRVPVMVGHSEAVNIEFERD-LSPETARKILEKAPGVKVLDNPSDCEYPLPMDVAGQD 298

Query: 300 DVFVGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAE 338
           DV+VGRIR+D    +G +LWVV DNL KGAA N+VQIAE
Sbjct: 299 DVYVGRIRRDFSVDHGLNLWVVGDNLRKGAALNAVQIAE 337


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 317
Number of extensions: 15
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 350
Length adjustment: 29
Effective length of query: 317
Effective length of database: 321
Effective search space:   101757
Effective search space used:   101757
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_014450628.1 LFE_RS12725 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.27733.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27733.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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