Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_014626247.1 RRU_RS09275 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2
(612 letters)
>NCBI__GCF_000013085.1:WP_014626247.1
Length = 617
Score = 911 bits (2355), Expect = 0.0
Identities = 452/613 (73%), Positives = 516/613 (84%), Gaps = 3/613 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
M YRSRT+THGR MAGARGLWRATGMKD DFGKPIIA+ NSFTQFVPGHVHLKD+GQLV
Sbjct: 1 MTPYRSRTSTHGRTMAGARGLWRATGMKDEDFGKPIIAIANSFTQFVPGHVHLKDMGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
A EI AAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIAD+VEYMVNAHCADA+VCIS
Sbjct: 61 AAEIAAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADAVEYMVNAHCADALVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180
NCDKITPGMLMA++RLNIPT+FVSGGPMEAGKVV+ G ++DL+DAMV A D K+SD D
Sbjct: 121 NCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKVVLGGTERSVDLIDAMVVAGDAKVSDAD 180
Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240
V+TIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGS LATH+ R+ LF EAG IV
Sbjct: 181 VETIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSALATHVARRGLFEEAGRRIV 240
Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300
DLA+R YE DD LPR IAS +AFENAM++DIAMGGSTNTVLH+LAAA EGE+ FTMAD
Sbjct: 241 DLAKRRYEHDDESTLPRAIASFKAFENAMSVDIAMGGSTNTVLHLLAAAQEGEVPFTMAD 300
Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360
ID LSRR+P L KV+P+ +D +MEDVHRAGG+M I+GEL + GLL+ D PTVH TL A
Sbjct: 301 IDRLSRRIPHLCKVSPSTADFYMEDVHRAGGVMGIMGELSRAGLLHEDLPTVHTPTLKAA 360
Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420
+D WDI R + VR F+RAAPGG+ T V FS + WD LD DRE G IR ++H +S+DG
Sbjct: 361 LDHWDIRRPVDDAVRAFFRAAPGGVRTVVPFSTDRLWDSLDDDRETGCIRDLDHAYSRDG 420
Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480
GLAVL GNLA +GCIVKTAGVD SIL F+G R+ ESQD +V IL E++AGDVV++RY
Sbjct: 421 GLAVLYGNLAPNGCIVKTAGVDASILTFTGTVRLCESQDEAVARILGGEIQAGDVVLVRY 480
Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540
EGPKGGPGMQEMLYPTSYLKS+GLGK CAL+TDGRFSGG+SGLSIGH SPEAA GG IGL
Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSRGLGKVCALVTDGRFSGGSSGLSIGHVSPEAAAGGPIGL 540
Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDAK---GWYPTEVRKRNVTTALKAYAAF 597
V EGD+I IDIP R+I + +S+ ELAARR+ +A+ GW P + RKR V+ AL+AYAA
Sbjct: 541 VEEGDIIVIDIPARSIVVDLSDEELAARRSAMEARGRAGWKPAKPRKRAVSPALRAYAAL 600
Query: 598 ATSADRGAVRDLN 610
TSADRGAVRD++
Sbjct: 601 TTSADRGAVRDVS 613
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1221
Number of extensions: 37
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 617
Length adjustment: 37
Effective length of query: 575
Effective length of database: 580
Effective search space: 333500
Effective search space used: 333500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_014626247.1 RRU_RS09275 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.32469.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32469.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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