Alignments for a candidate for carA in Ammonifex degensii KC4

Align Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_015738404.1 ADEG_RS01865 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P25993
         (364 letters)



>NCBI__GCF_000024605.1:WP_015738404.1
          Length = 359

 Score =  397 bits (1019), Expect = e-115
 Identities = 189/354 (53%), Positives = 260/354 (73%), Gaps = 3/354 (0%)

Query: 1   MKRRLVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGN 60
           M+  L LE+G VF G AFG+     GEVVF T MTGYQE+L+DPSYCGQIV LTYPL GN
Sbjct: 1   MRALLALEDGTVFSGRAFGARGEVWGEVVFATAMTGYQEVLTDPSYCGQIVVLTYPLAGN 60

Query: 61  YGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMI 120
           YGIN +D E+   +V+GL+++E C  PSNWRS  TL E+L+   +PG++G+DTR LTR +
Sbjct: 61  YGINLEDNEAGRVWVRGLVVREYCPTPSNWRSTCTLAEFLQTHGVPGIEGVDTRALTRRL 120

Query: 121 RTAGALKGTFASSDEDIEAVLK--RLNETELPRNQVSQVSAKTAYPSPGRGKRIVLVDFG 178
           R  G+++G  ++ D D E+++   RL  +    + VS+V  ++AY  PG G R+V+VDFG
Sbjct: 121 REHGSMRGVISTEDLDPESLVAKARLAPSLSEEDLVSEVVTRSAYTIPGEGPRVVVVDFG 180

Query: 179 MKHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVLG 238
           +K  ILR+L +R C+++VVP   +A+E+L L P G++LSNGPGDP  +  A + +K +LG
Sbjct: 181 VKQSILRQLRERGCELVVVPPTSSAQEILALAPQGVLLSNGPGDPSRLTGARDTVKALLG 240

Query: 239 KVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVSSIS- 297
           +VPL GICLGHQ+ AL+ GA T K+KFGH G NHPVK+LATG+V +TS NHG+ V   S 
Sbjct: 241 RVPLMGICLGHQVAALSLGARTFKLKFGHHGINHPVKDLATGRVFITSHNHGFAVDPASL 300

Query: 298 KTELEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMIE 351
             ELEV++I++ND T+EGL+HK LP F+VQ+HPE  PGP+DA  +FDRF+E+++
Sbjct: 301 PPELEVSYISLNDGTVEGLRHKFLPFFSVQFHPEGGPGPQDAAFIFDRFLELLQ 354


Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 414
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 359
Length adjustment: 29
Effective length of query: 335
Effective length of database: 330
Effective search space:   110550
Effective search space used:   110550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_015738404.1 ADEG_RS01865 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.28425.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28425.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.