Alignments for a candidate for leuD in Ammonifex degensii KC4

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_015739104.1 ADEG_RS05575 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_000024605.1:WP_015739104.1
          Length = 166

 Score =  157 bits (398), Expect = 6e-44
 Identities = 81/159 (50%), Positives = 113/159 (71%), Gaps = 3/159 (1%)

Query: 5   IKGRVWKFGNNVDTDAILPARYLVYTKP-EELAQFVMTGADPDFPKKVKPGDIIVGGKNF 63
           ++GR  KFG++++TD I+  +Y   T   EELA+ VM   DP+F  K++PGD IV G NF
Sbjct: 1   MRGRAHKFGDDINTDYIISGKYKFKTLDMEELARHVMEDLDPEFYHKIRPGDFIVAGWNF 60

Query: 64  GCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVN 123
           GCGSSRE APL +K A I  V+A+SFARIF+RNAIN GLP++EC   ++++  GDELEV+
Sbjct: 61  GCGSSREQAPLVIKHARIGAVLAKSFARIFFRNAINTGLPVVECD--TDQIEAGDELEVD 118

Query: 124 LETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKK 162
           L  G ++NLT G  +  + LP  M++ILE GGL+ + +K
Sbjct: 119 LARGVVENLTKGISIPIKPLPPVMLKILEDGGLIAHFQK 157


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 166
Length adjustment: 18
Effective length of query: 150
Effective length of database: 148
Effective search space:    22200
Effective search space used:    22200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_015739104.1 ADEG_RS05575 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.18714.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18714.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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