Alignments for a candidate for argH in Ammonifex degensii KC4

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate WP_015739790.1 ADEG_RS09230 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>NCBI__GCF_000024605.1:WP_015739790.1
          Length = 462

 Score =  436 bits (1120), Expect = e-126
 Identities = 227/443 (51%), Positives = 304/443 (68%), Gaps = 4/443 (0%)

Query: 7   WSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLVAGLE 66
           W  RF     P +  F  SI FD  L  Y++  SQAH + L   G+++ EE E+L+AGLE
Sbjct: 5   WGGRFRKETDPRVRAFQDSISFDFRLWPYEIQVSQAHVRGLRKIGVLTPEEEEKLLAGLE 64

Query: 67  QIRQEHRQGKFH-PGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLYLRD 125
           ++R+  ++G+    GV  EDVH  VE+ L E VG+VGKKLHT RSRND V TD RLYLR+
Sbjct: 65  EVRRILKRGEVQLEGV--EDVHTLVEQLLVERVGEVGKKLHTGRSRNDLVVTDLRLYLRE 122

Query: 126 QIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDWERL 185
           +I  ++  L+E + VLL++AE+H  TL+PG+THLQ AQPV+LAHHLLAY++M  RD ERL
Sbjct: 123 EINNLRERLQELRRVLLELAEQHCHTLMPGFTHLQPAQPVTLAHHLLAYYEMFTRDDERL 182

Query: 186 GDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLCAAS 245
            D  RR N+ PLG GALAG+TFP+DR Y A+LL F+ +  NS+D VSDRDF +EF  AA 
Sbjct: 183 ADCYRRTNVLPLGAGALAGSTFPLDREYVAELLGFEKVAENSMDAVSDRDFVVEFCAAAV 242

Query: 246 LIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVFGHL 305
           L+M+HLSRLAEE+ILWS+  F FV L D+  TGSS+MPQKKNPDV EL R KT RV G+ 
Sbjct: 243 LLMIHLSRLAEELILWSTPYFDFVELDDAFTTGSSMMPQKKNPDVAELCRAKTARVIGNF 302

Query: 306 QAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQAVTE 365
            A+  ++K LPL YNKDLQEDK  LFD+V+T+KA LE    +L   ++ + +++A A   
Sbjct: 303 TALATLLKALPLTYNKDLQEDKPLLFDTVDTLKAVLEVFPPMLAT-MKVKREQMAAAARR 361

Query: 366 DFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFAADIY 425
            F  ATD+A+YL  +G+PFREA+ +VG++V   +  GK L++L LEE+++  P    D+ 
Sbjct: 362 GFLTATDLAEYLVRKGLPFREAHRVVGEIVLYCLEQGKDLEELSLEEFRRFTPLVEEDVL 421

Query: 426 EAISPRQVVAARNSHGGTGFVQV 448
           EA+   + +  R   GG   V V
Sbjct: 422 EAVKLEKSLDKRTLRGGPAPVTV 444


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 526
Number of extensions: 23
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 462
Length adjustment: 33
Effective length of query: 428
Effective length of database: 429
Effective search space:   183612
Effective search space used:   183612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_015739790.1 ADEG_RS09230 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7204.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7204.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.