Alignments for a candidate for argG in Ammonifex degensii KC4

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_015739791.1 ADEG_RS09235 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000024605.1:WP_015739791.1
          Length = 399

 Score =  496 bits (1278), Expect = e-145
 Identities = 238/391 (60%), Positives = 306/391 (78%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTSII+ WLKE Y  EVIA T D+GQGE++   REKALR+GA+KA  +D 
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKENYGYEVIALTVDLGQGEDLAAIREKALRSGAAKAYVVDA 63

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEFVR++VFP+++AGA+YEG YLLGT++ARPLIAK LV +A +EGAEA+AHGATGKGND
Sbjct: 64  REEFVREYVFPVLKAGAIYEGKYLLGTAMARPLIAKKLVEVARQEGAEAVAHGATGKGND 123

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHI 181
           QVRFE+   AL P++KVIAPWREWS + R E +AYAEA GIPVP T  +PYS D NL H+
Sbjct: 124 QVRFEVGVRALAPELKVIAPWREWSIRSRTEAMAYAEARGIPVPATPSQPYSRDQNLWHL 183

Query: 182 SYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQR 241
           S+EGGVLEDP  EPP+ +F++ + PEEAPD P Y+E+ F +G+PVA+NG++LSP  LL+ 
Sbjct: 184 SHEGGVLEDPAQEPPRDLFQLIKPPEEAPDQPLYLEIAFEKGEPVALNGQKLSPVPLLEE 243

Query: 242 LNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDML 301
           LN + G  GVG  D+VENR VG+KSRGVYETPGGT+L++A R +E L LDR  LH ++++
Sbjct: 244 LNRLAGEQGVGIADLVENRLVGIKSRGVYETPGGTVLFYALRELERLVLDRSTLHFKNIV 303

Query: 302 SPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQD 361
           +  YAELVY G W++P +EAL A+ + +   +TG  RLKLYKGN+Y  G  +P SLYRQD
Sbjct: 304 AQTYAELVYDGLWFSPLKEALDAFVNSLTPYLTGTVRLKLYKGNLYPAGVSSPYSLYRQD 363

Query: 362 LVSFDEAGGYDQKDAEGFIKIQALRLRVRAL 392
           L +F+    +DQ+DA GFI+I  L L V+AL
Sbjct: 364 LATFEADELFDQRDAGGFIRIFGLPLWVQAL 394


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 520
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 399
Length adjustment: 31
Effective length of query: 369
Effective length of database: 368
Effective search space:   135792
Effective search space used:   135792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_015739791.1 ADEG_RS09235 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.30036.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30036.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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