Alignments for a candidate for thrC in Teredinibacter turnerae T7901

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_015817374.1 TERTU_RS05180 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000023025.1:WP_015817374.1
          Length = 471

 Score =  485 bits (1248), Expect = e-141
 Identities = 250/468 (53%), Positives = 325/468 (69%), Gaps = 8/468 (1%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           MKY+STRG+AP L F D +L GLA DGGLY+P+  P+F+ E+I +  G SY  +AL +++
Sbjct: 1   MKYISTRGQAPALNFEDVVLTGLATDGGLYVPETLPEFSQEEIASWAGLSYEALALKIIS 60

Query: 61  PFTGGEIPAADFERMVREAYGT-----FRHDAVCPLVQTDANEFVLELFHGPTLAFKDVA 115
           PF  GEIP AD +R++  +Y T     FRH+A+ PLVQT  NE+VLELF GPTLAFKD A
Sbjct: 61  PFVEGEIPEADLKRLIAASYKTSADKGFRHEAIAPLVQTGHNEWVLELFQGPTLAFKDFA 120

Query: 116 MQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQR 175
           +Q L  ++DYVL +R ++  I+GATSGDTG AAIE     +N DIFIL P  +VS VQ+R
Sbjct: 121 LQFLGHLLDYVLKKRDQKVVIMGATSGDTGSAAIEGCRDCENVDIFILHPYQKVSDVQRR 180

Query: 176 QMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFC-DALSLSGVNSINWARIMPQVVYY 234
           QMT+    NVH ++++GNFDDCQN+VK  F D  F  +   L  VNSINWARIM Q+VYY
Sbjct: 181 QMTTVLEDNVHNIALQGNFDDCQNMVKASFADQSFLPEGRQLVAVNSINWARIMAQIVYY 240

Query: 235 FTAALSLGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGA 294
           F A L+LGAP R VSF+VPTGNFGDIFAGY+AKRMGLPIEQL+IATN NDIL R +    
Sbjct: 241 FYAGLALGAPHRPVSFSVPTGNFGDIFAGYLAKRMGLPIEQLVIATNSNDILHRCISEND 300

Query: 295 YEMRGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAI 354
           +  + +  + SPSMDI +SSNFER+LF+ HGRD   +  LM+  K  G   + +  L+  
Sbjct: 301 HSKQALVHSLSPSMDIMVSSNFERMLFDLHGRDGNKIGALMETFKSEGSMVLDDAVLAEA 360

Query: 355 RSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVARE-KASGTAPMVVLATAHPA 413
           R+ FS+ R   DET   I SV     YLLDPH+AIGV+ AR+ + + + PMV LATAHPA
Sbjct: 361 RALFSSYRVGDDETVDVIRSVFESTEYLLDPHTAIGVQAARQTRRNNSTPMVCLATAHPA 420

Query: 414 KFPDAVKAACGV-EPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHH 460
           KFP+AVK A    +P LP  + DL  R+E + V+ ++L  V+ ++R +
Sbjct: 421 KFPEAVKQAGQTSDPALPFHMQDLFTREERYQVIADDLSQVQLFIREN 468


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 533
Number of extensions: 21
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 471
Length adjustment: 33
Effective length of query: 430
Effective length of database: 438
Effective search space:   188340
Effective search space used:   188340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_015817374.1 TERTU_RS05180 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.28703.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28703.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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