Alignments for a candidate for argE in Sinorhizobium fredii NGR234

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_015886760.1 NGR_RS03100 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000018545.1:WP_015886760.1
          Length = 374

 Score =  622 bits (1604), Expect = 0.0
 Identities = 306/374 (81%), Positives = 333/374 (89%)

Query: 1   MQAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKE 60
           MQ  +IL KLVGF +VVG  N D+V+WIR YL+ HGIAV VLPGPEGDRSN+FATIGPKE
Sbjct: 1   MQVIKILEKLVGFPTVVGTSNADIVAWIRDYLQIHGIAVAVLPGPEGDRSNLFATIGPKE 60

Query: 61  ARGYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMP 120
             GYI+SGHMDVVPAAE+GWTSDPFRLR E   L+GRG TDMKGFLAAVLA++P+L A P
Sbjct: 61  VPGYILSGHMDVVPAAESGWTSDPFRLRAETGTLFGRGATDMKGFLAAVLASLPRLTASP 120

Query: 121 LRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLT 180
           LRRP+HLA SYDEEAGCRGVPHMIARLPELC  PLGAIIGEP+GMRAIRAHKGKAAARLT
Sbjct: 121 LRRPIHLAFSYDEEAGCRGVPHMIARLPELCASPLGAIIGEPSGMRAIRAHKGKAAARLT 180

Query: 181 VRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRLVGGPFEHVFEPPYSSLQIGTVKGGQ 240
           VRGRSGHSSRPD+GLNAIH +A VL++AVA ADRL  GPFEHVFEPPYSSLQ+G VKGGQ
Sbjct: 181 VRGRSGHSSRPDEGLNAIHAIANVLSRAVAAADRLTQGPFEHVFEPPYSSLQVGIVKGGQ 240

Query: 241 AVNIIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFEVEWQELSAYPALSLEPD 300
           AVNIIPDSCE EFEARAISGVDP  LLAPVR+ AE L+  GF+VEWQ+LSAYPALSL PD
Sbjct: 241 AVNIIPDSCEAEFEARAISGVDPTALLAPVREAAETLSGRGFKVEWQQLSAYPALSLPPD 300

Query: 301 APLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDELMA 360
           APLAALLEELTG E LPAVSYGTEAGLFQRAGIDAIICGPG+IGRAHKPDE+IL DEL+A
Sbjct: 301 APLAALLEELTGLEPLPAVSYGTEAGLFQRAGIDAIICGPGEIGRAHKPDEFILADELVA 360

Query: 361 CRAMVEALGARCTA 374
           C+AMVEALG RC A
Sbjct: 361 CQAMVEALGERCRA 374


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 541
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 374
Length adjustment: 30
Effective length of query: 344
Effective length of database: 344
Effective search space:   118336
Effective search space used:   118336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_015886760.1 NGR_RS03100 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.30712.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30712.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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