Alignments for a candidate for gatA in Methylobacterium nodulans ORS 2060

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_015929904.1 MNOD_RS15675 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000022085.1:WP_015929904.1
          Length = 497

 Score =  433 bits (1113), Expect = e-126
 Identities = 235/445 (52%), Positives = 303/445 (68%), Gaps = 10/445 (2%)

Query: 39  KVQAFLALDEERARAYAKELDEAVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILEN 98
           K+ A+L    ERA A A+  D  +    E   L G+P+G+KD   T  + TT  SKILE 
Sbjct: 43  KLNAYLIETPERALAMAEVADRKI-AAGEARPLEGLPLGIKDLFCTHDVPTTAGSKILEG 101

Query: 99  FDPIYDATVVQRLQDAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPW-----NLDTVPGG 153
           F P Y++TV   L    AV +GKLN+DEFAMGSS E SAY    +PW     +   VPGG
Sbjct: 102 FRPHYESTVSHNLWRDGAVMLGKLNLDEFAMGSSNETSAYGPVISPWRRRDSDAPLVPGG 161

Query: 154 SSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQI 213
           SSGGSAAAVAA     +  +DTGGSIRQPA+F G VG+KPTYGR SR+G+VAFASSLDQ 
Sbjct: 162 SSGGSAAAVAARLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQA 221

Query: 214 GPITRTVEDNAFLLQAISGVDKMDSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVG 273
           GPI RTV D A LL +++G D  D+T  +  VPD+  ++   +KGL I +PKEY  +G+ 
Sbjct: 222 GPIARTVRDTAILLTSMAGHDPKDTTCVDRPVPDYEKAVGRGVKGLTIGIPKEYRVDGMP 281

Query: 274 KEARESVLAALKVLEGLGATWEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRT 333
            E         + L+  GAT  EVSLPH++YAL  YY+++ +EAS+NLAR+DG+RYG R 
Sbjct: 282 AEIERLWHQGAEWLKAAGATIVEVSLPHTQYALPAYYIVAPAEASSNLARYDGVRYGLRV 341

Query: 334 DNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVF 393
             A +++ +Y+QTRA GFG EVKRRIM+GT+ LS+GYYDAYY +AQK+RTLIK+DFE V+
Sbjct: 342 P-AKDIVGMYEQTRAAGFGREVKRRIMIGTYVLSAGYYDAYYVRAQKIRTLIKRDFEAVY 400

Query: 394 EK-YDVIVGPTTPTPAFKIGE-NTKDPLTMYANDILTIPVNLAGVPGISVPCGL-ADGLP 450
               D I+ P TP+ AF IGE    DP+ MY ND+ T+ VN+AG+PGI+VP GL A GLP
Sbjct: 401 ANGVDAILTPATPSAAFGIGEKQNADPVEMYLNDVFTVTVNMAGLPGIAVPAGLDAQGLP 460

Query: 451 LGLQIIGKHFDESTVYRVAHAFEQA 475
           LGLQ+IG+ FDE T++      E+A
Sbjct: 461 LGLQLIGRPFDEETLFAAGQVIEEA 485


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 617
Number of extensions: 38
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 497
Length adjustment: 34
Effective length of query: 451
Effective length of database: 463
Effective search space:   208813
Effective search space used:   208813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_015929904.1 MNOD_RS15675 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.9586.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9586.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.