Alignments for a candidate for argE in Methylobacterium nodulans ORS 2060

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_015930215.1 MNOD_RS17235 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000022085.1:WP_015930215.1
          Length = 380

 Score =  399 bits (1026), Expect = e-116
 Identities = 206/374 (55%), Positives = 257/374 (68%), Gaps = 8/374 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           +IL  LV F SV   PN  +V+++R +L  HGIA  ++PGPEGDRSN+FAT+GP+E  GY
Sbjct: 6   QILADLVAFPSVCRTPNGAIVAYVREHLARHGIAAQIIPGPEGDRSNLFATLGPREVPGY 65

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           I+S H+DVVPA   GWT DPFRLR   DRL GRG  DMKGF+A +LA +P++    L+RP
Sbjct: 66  ILSAHLDVVPAPAAGWTGDPFRLRRAGDRLIGRGAVDMKGFVACLLATLPEI-GRDLQRP 124

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           LH+ALSYDEE GC GV H+IARLPE C  PLG I+GEP+ +  +  HKGK A RL VRGR
Sbjct: 125 LHIALSYDEEVGCVGVRHLIARLPEFCAPPLGCIVGEPSDLHPVLRHKGKVAGRLIVRGR 184

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRLV-GGPFEHVFEPPYSSLQIGTVKGGQAVN 243
           +GHSSRPD   NA+H  A ++       +RL   GPF   FEPP S+LQ+G + GG +VN
Sbjct: 185 AGHSSRPDLAENAVHHAADLVGLVRDLHERLSREGPFHPAFEPPASTLQVGVIAGGTSVN 244

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAEA-LTTLGFE-----VEWQELSAYPALSL 297
           ++PD C +++EARAI G DP  L A + +   A L  L  E     VE + LS YPAL L
Sbjct: 245 VVPDQCAIDWEARAIPGTDPMALHAALEEAIAAWLAPLQAEGRPVQVESEVLSGYPALDL 304

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
              A L A+ E+L+GREA  AVS+GTEAGL+Q AGI AIICGPG I +AHKPDE+I   +
Sbjct: 305 PDHADLRAMAEDLSGREARGAVSFGTEAGLYQAAGIPAIICGPGSIAQAHKPDEFIAAAD 364

Query: 358 LMACRAMVEALGAR 371
           L AC AM+  L AR
Sbjct: 365 LDACCAMLRRLAAR 378


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 25
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 380
Length adjustment: 30
Effective length of query: 344
Effective length of database: 350
Effective search space:   120400
Effective search space used:   120400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_015930215.1 MNOD_RS17235 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.17721.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17721.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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