Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_015930933.1 MNOD_RS20820 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000022085.1:WP_015930933.1
Length = 1157
Score = 1268 bits (3281), Expect = 0.0
Identities = 683/1143 (59%), Positives = 805/1143 (70%), Gaps = 90/1143 (7%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDI SILI+GAGPIVIGQACEFDYSG QACKALR EGYR+ILVNSNPATIMTDPE+
Sbjct: 1 MPKRTDISSILIIGAGPIVIGQACEFDYSGTQACKALRAEGYRIILVNSNPATIMTDPEL 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATY+EPI E+V KIIEKERPDA+LPTMGGQTALNCAL L+R GVL++FGV MIGATA
Sbjct: 61 ADATYVEPITPEIVAKIIEKERPDALLPTMGGQTALNCALSLKRMGVLDQFGVQMIGATA 120
Query: 121 DAIDKAEDRRRFDVAMKKIGL-----------------------------------ETAR 145
+AIDKAEDR F AM KIGL E +
Sbjct: 121 EAIDKAEDRHLFRDAMAKIGLETPRSALANASAAKKADREKYLEEIARIEAAHADPEARK 180
Query: 146 SGIA-------------------HTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNRE 186
+ +A H + +AL A++G P IIRPSFT+GG+GGGIAYNRE
Sbjct: 181 AALAAFEKKWAAGEADRRKRYGEHALGQALIALAEIGLPAIIRPSFTLGGTGGGIAYNRE 240
Query: 187 EFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGD 246
EF +I RG+D SPT E+LI+ES++GWKEYEMEVVRDK DNCII+CSIEN D MG+HTGD
Sbjct: 241 EFLDIVERGIDASPTNEVLIEESVLGWKEYEMEVVRDKVDNCIIICSIENIDPMGVHTGD 300
Query: 247 SITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSR 306
SITVAPA TLTDKEYQ+MR+AS+AVLREIGVETGGSNVQFA++P GR++VIEMNPRVSR
Sbjct: 301 SITVAPALTLTDKEYQVMRDASIAVLREIGVETGGSNVQFAIDPATGRMVVIEMNPRVSR 360
Query: 307 SSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEK 366
SSALASKATGFPIAKVAAKLAVGYTLDE+ NDITGG TPASFEP+IDYVVTKIPRF FEK
Sbjct: 361 SSALASKATGFPIAKVAAKLAVGYTLDEIANDITGGATPASFEPTIDYVVTKIPRFAFEK 420
Query: 367 FAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFD--PKVSLDDPEALTKI 424
F GA LTT MKSVGE MAIGR ESLQKALR LE G TG D L + I
Sbjct: 421 FPGAEPTLTTSMKSVGEAMAIGRCFAESLQKALRSLETGLTGLDDIEIEGLGKGDDRNAI 480
Query: 425 RRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGL 484
+ L DR+ +A A R G+S V ID WFL Q++ +V LE KV G+
Sbjct: 481 KAALGTPTPDRLLKVAQALRLGVSHAEVHASCRIDPWFLEQLQAIVDLEAKVRRFGLP-T 539
Query: 485 NADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMY 544
N RQLK GF+DARLA LAG EA +R R + PV+KR+DTCAAEFA+ TAYMY
Sbjct: 540 NPGAFRQLKAAGFSDARLAVLAGTDEAAVRAARRALAVRPVFKRIDTCAAEFASPTAYMY 599
Query: 545 STYEEEC------EANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIM 598
STY EA PS DR+K+++LGGGPNRIGQGIEFDYCC HA AL + GYETIM
Sbjct: 600 STYVAPFAGTLADEAQPS-DRKKVVILGGGPNRIGQGIEFDYCCCHACFALADAGYETIM 658
Query: 599 VNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKP----KGVIVQYGGQTPLKLARAL 654
VNCNPETVSTDYDTSDRLYFEP+T EDVLEI+ E+ GVIVQ+GGQTPLKLARAL
Sbjct: 659 VNCNPETVSTDYDTSDRLYFEPLTAEDVLEIIETERQAGTLHGVIVQFGGQTPLKLARAL 718
Query: 655 EAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVV 714
E AGVP++GTSPDAID AEDR++F+ +++L LKQP N ++E + A ++G P VV
Sbjct: 719 EEAGVPILGTSPDAIDLAEDRDQFKRLLDKLHLKQPKNGIAFSVEQSRLVAADLGLPFVV 778
Query: 715 RPSYVLGGRAMEIVYDEADLRRYFQTAV---------------------SVSNDAPVLLD 753
RPSYVLGGRAM I+ DEA Y + +V P+L D
Sbjct: 779 RPSYVLGGRAMAIIRDEAQFADYLLDTLPSLIPSDVKARYPNDKTGQINTVLGKNPLLFD 838
Query: 754 HFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQV 813
+L DA EVDVDA+ DG V I GIMEHIE+AG+HSGDSACSLP +LS E + QQ
Sbjct: 839 RYLTDATEVDVDAVADGRDVFIAGIMEHIEEAGIHSGDSACSLPPRSLSPETIAKLEQQT 898
Query: 814 QKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKS 873
+ LA L V GLMNVQ+A+K+ E+Y++EVNPRA+RTVPFV+K G P+AK+AARVMAG++
Sbjct: 899 RDLALALNVGGLMNVQYAIKDGEIYVLEVNPRASRTVPFVAKVIGEPIAKIAARVMAGEA 958
Query: 874 LAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQL 933
LA G+ + + P+ VKE V PF +FPGVD LLGPEMRSTGEV+G+ R+F AFAK+QL
Sbjct: 959 LASFGLKPKTL-PHIGVKEAVFPFARFPGVDVLLGPEMRSTGEVIGLDRSFGVAFAKSQL 1017
Query: 934 GSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNK 993
GS + + G +SVR+ DK R++ L + GF + AT GT L E G+ +NK
Sbjct: 1018 GSGNQVPSTGTLFVSVRDADKARILPAVRMLAELGFTILATGGTQRFLAENGVAATRINK 1077
Query: 994 VHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMA 1053
V EGRPH+ D IKNGE + NTT G A+ DSR +RR+AL +KV Y TTL G A A
Sbjct: 1078 VLEGRPHVVDAIKNGEIHLVFNTTEGAGALSDSRSLRRAALLHKVPYYTTLAGAMAAAEG 1137
Query: 1054 LNA 1056
+ A
Sbjct: 1138 IRA 1140
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3196
Number of extensions: 141
Number of successful extensions: 19
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1073
Length of database: 1157
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1111
Effective search space: 1140997
Effective search space used: 1140997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_015930933.1 MNOD_RS20820 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.24150.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24150.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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