Alignments for a candidate for thrB in Methylobacterium nodulans ORS 2060

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate WP_015933559.1 MNOD_RS34340 homoserine kinase

Query= reanno::Korea:Ga0059261_3253
         (319 letters)



>NCBI__GCF_000022085.1:WP_015933559.1
          Length = 321

 Score =  299 bits (766), Expect = 5e-86
 Identities = 152/307 (49%), Positives = 202/307 (65%), Gaps = 2/307 (0%)

Query: 1   MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60
           MAVYT+V  EAL  FL+ Y++G L+S KGIAEGVEN+N+ + TT   +ILTLYEKRV   
Sbjct: 1   MAVYTEVPDEALGAFLSDYNIGGLLSYKGIAEGVENTNFFLHTTAGSYILTLYEKRVAEQ 60

Query: 61  DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120
           DLP+F+GL++HLAA+GL  P  I+ R G  +  L GRPA ++ FL G+S+  P     RA
Sbjct: 61  DLPFFLGLMEHLAARGLACPQPIRTRAGTALGRLCGRPAVIVSFLEGVSVRRPGTRHCRA 120

Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180
            G A+A +H A ADFP+ RPN++ V+ W+PLF +     D++ P L +     +AR+  A
Sbjct: 121 LGRALAGLHAAGADFPMRRPNALSVEAWRPLFAQAEAQADRVAPNLAERTRADLARLEEA 180

Query: 181 WTRNDFDRCAIHADLFPDNVLMRGDQVTGLIDFYFACTDIRVYDLAVMHSAWSFDAHGRN 240
           W  +D     IHADLF DNV   GD+V+GLIDFYFACTD   YDLA+  +AW F+  G +
Sbjct: 181 WP-SDLPGGVIHADLFTDNVFFIGDEVSGLIDFYFACTDAFAYDLAICLNAWCFEPDG-S 238

Query: 241 YDPAVGDALIAGYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADALVMRKDP 300
           ++   G A+IA Y+++ PL   E A+ P L  GA +RF L+R  DWLN P  ALV  KDP
Sbjct: 239 FNRTKGQAMIAAYQSARPLEPREVASLPLLCQGAALRFMLTRLVDWLNVPPGALVKPKDP 298

Query: 301 LAYVRRL 307
           L Y R+L
Sbjct: 299 LEYDRKL 305


Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 304
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 321
Length adjustment: 28
Effective length of query: 291
Effective length of database: 293
Effective search space:    85263
Effective search space used:    85263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_015933559.1 MNOD_RS34340 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.14390.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14390.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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