Alignments for a candidate for ilvE in Methylobacterium nodulans ORS 2060

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_015933570.1 MNOD_RS34390 branched-chain amino acid aminotransferase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000022085.1:WP_015933570.1
          Length = 295

 Score =  231 bits (589), Expect = 2e-65
 Identities = 119/263 (45%), Positives = 165/263 (62%), Gaps = 5/263 (1%)

Query: 6   RDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKRLLN 65
           R+G IW DG+++ W DAKIHVLTH LHYG  VFEG RAY     G  IF+  EH+ RL  
Sbjct: 9   REGHIWFDGRMVPWADAKIHVLTHGLHYGSCVFEGERAY-----GGQIFKSTEHSARLRR 63

Query: 66  SAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVAIAA 125
           SA++   ++PF    + AA+  V++E+ L   YLRP+ W GSE +GVSA+ NTIH+AIAA
Sbjct: 64  SAELLDFEIPFSVAEIDAAKALVLKESGLSDAYLRPVAWRGSEMMGVSAQHNTIHLAIAA 123

Query: 126 WPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYDEAL 185
           W W +Y       KGIR+  + + R     +   +KA+G Y+   ++   A   GY +AL
Sbjct: 124 WEWPSYFDPATKMKGIRLDLADYRRPDPRTAPSASKAAGLYMICTISKHRAERKGYADAL 183

Query: 186 LLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRITRD 245
           +LD +  V+E +G N F + +G ++TP     LDGITR TVI LAR  G +V+E+RI  +
Sbjct: 184 MLDWEDNVAECTGANVFFIKDGVVHTPIADRFLDGITRQTVIELARRRGYEVVERRIRPE 243

Query: 246 EVYTCDEAFFTGTAAEVTPIREL 268
           E+    E F TG+AAEVTP+ E+
Sbjct: 244 EMAGFTECFITGSAAEVTPVSEI 266


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 252
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 295
Length adjustment: 27
Effective length of query: 280
Effective length of database: 268
Effective search space:    75040
Effective search space used:    75040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_015933570.1 MNOD_RS34390 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.12959.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12959.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.