Alignments for a candidate for dapC in Nocardiopsis lucentensis DSM 44048

Align succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) (characterized)
to candidate WP_017596987.1 D471_RS0101495 succinyldiaminopimelate transaminase

Query= BRENDA::Q82IK5
         (364 letters)



>NCBI__GCF_000341125.1:WP_017596987.1
          Length = 369

 Score =  481 bits (1237), Expect = e-140
 Identities = 240/363 (66%), Positives = 281/363 (77%), Gaps = 3/363 (0%)

Query: 4   VSDRLPTFPWDKLEPYKARAAAHPDGIVDLSVGTPVDPVPELIQKALVAAADSPGYPTVW 63
           V+DRLPTFPWD+L PYK  A+A PDGIVDLSVGTPVDPV   +++AL  AADSPGYP  W
Sbjct: 7   VTDRLPTFPWDRLAPYKRTASASPDGIVDLSVGTPVDPVSPNLRQALADAADSPGYPMTW 66

Query: 64  GTPELRDALTGWVERRLGARGVTHHHVLPIVGSKELVAWLPTQLGLGPGDKVAHPRLAYP 123
           GTPELR +++GW+ RR G R V    VLP VGSKELVAWLPT LGLG GD V HP LAYP
Sbjct: 67  GTPELRASISGWLARRHGVR-VEEDAVLPTVGSKELVAWLPTLLGLGEGDTVVHPELAYP 125

Query: 124 TYEVGARLARADHVVYDDPTELDPTGLKLLWLNSPSNPTGKVLSKAELTRIVAWAREHGI 183
           TY+VGARLA A  V  D  T L P  + L+W+NSPSNPTG+VL    L ++V WARE G 
Sbjct: 126 TYDVGARLAGATPVASDGLTALGPAPVGLVWVNSPSNPTGRVLDVPHLRKVVQWARERGA 185

Query: 184 LVFSDECYLELGWE-ADPVSVLHPDVCGGSYEGIVSVHSLSKRSNLAGYRAAFLAGDPAV 242
           +V SDECYL+LGWE  +PVS+LHPDVC GS+E +++VHSLSKRSNLAGYRAAF+AGDPA+
Sbjct: 186 VVASDECYLDLGWEDREPVSILHPDVCDGSHENLLAVHSLSKRSNLAGYRAAFVAGDPAL 245

Query: 243 LGPLLQIRKHGGMMTSAPTQAAVVAALGDDAHVREQRERYAARRTALRDALLSHGFRIEH 302
           +G LL +RKH GM+  AP QAA+ AAL DD H  EQ+ERY ARRT LR A    G+RIEH
Sbjct: 246 VGELLAVRKHAGMIVPAPVQAAMRAALDDDGHAAEQKERYRARRTRLRTAFEGAGWRIEH 305

Query: 303 SEASLYLWATRGE-SCWDTVAHLADLGILVAPGDFYGSAGEQFVRVALTATDERVAAAVR 361
           S+A LYLWA+  E   W  V+ LADLG+LVAPGDFYG+AG + VRVA TATDER+ AAV+
Sbjct: 306 SDAGLYLWASHSEHDAWGAVSTLADLGVLVAPGDFYGTAGARHVRVAFTATDERIEAAVK 365

Query: 362 RLA 364
           RLA
Sbjct: 366 RLA 368


Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 585
Number of extensions: 26
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 369
Length adjustment: 30
Effective length of query: 334
Effective length of database: 339
Effective search space:   113226
Effective search space used:   113226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_017596987.1 D471_RS0101495 (succinyldiaminopimelate transaminase)
to HMM TIGR03539 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.11377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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