Alignments for a candidate for serA in Nocardiopsis lucentensis DSM 44048

Align phosphoglycerate dehydrogenase (EC 1.1.1.95) (characterized)
to candidate WP_017598160.1 D471_RS0108145 phosphoglycerate dehydrogenase

Query= BRENDA::Q9Z564
         (529 letters)



>NCBI__GCF_000341125.1:WP_017598160.1
          Length = 529

 Score =  723 bits (1866), Expect = 0.0
 Identities = 361/525 (68%), Positives = 445/525 (84%)

Query: 4   KPVVLIAEELSPATVDALGPDFEIRHCNGADRAELLPAIADVDAILVRSATKVDAEAVAA 63
           KP VL+AE+LSPA +  L  DFE+RH +GADR++LLPA+ADVDA++VRSAT++DAEA+AA
Sbjct: 3   KPAVLVAEKLSPAGIALLEEDFEVRHVDGADRSQLLPALADVDAVIVRSATQIDAEALAA 62

Query: 64  AKKLKVVARAGVGLDNVDVSAATKAGVMVVNAPTSNIVTAAELACGLIVATARNIPQANA 123
           A +L+VVARAGVGLDNVDV AATKAGV+VVNAPTSNI++AAE A  L++A+ARN   A+ 
Sbjct: 63  ASRLQVVARAGVGLDNVDVDAATKAGVLVVNAPTSNIISAAEQAINLLLASARNTAPAHN 122

Query: 124 ALKNGEWKRSKYTGVELAEKTLGVVGLGRIGALVAQRMSAFGMKVVAYDPYVQPARAAQM 183
           AL NGEWKRSKYTGVEL EK +GVVGLGRIGALVAQR+SAFG KV+AYDP+VQPARAAQ+
Sbjct: 123 ALINGEWKRSKYTGVELYEKVVGVVGLGRIGALVAQRLSAFGTKVIAYDPFVQPARAAQI 182

Query: 184 GVKVLSLDELLEVSDFITVHLPKTPETLGLIGDEALRKVKPSVRIVNAARGGIVDEEALY 243
           GV++ +LD+LLE SDFIT+HLPK  +TLGLI DEAL KVKPSVR++NAARGGI+DE+ALY
Sbjct: 183 GVEMTTLDDLLERSDFITIHLPKNKDTLGLISDEALSKVKPSVRVINAARGGILDEDALY 242

Query: 244 SALKEGRVAGAGLDVYAKEPCTDSPLFEFDQVVATPHLGASTDEAQEKAGIAVAKSVRLA 303
            ALK+GRVAGAG+DV+AKEPCTDSPLFEF+ VV  PHLGAST EAQEKAG  VA+SV+LA
Sbjct: 243 RALKDGRVAGAGIDVFAKEPCTDSPLFEFENVVVAPHLGASTTEAQEKAGTQVARSVKLA 302

Query: 304 LAGELVPDAVNVQGGVIAEDVKPGLPLAERLGRIFTALAGEVAVRLDVEVYGEITQHDVK 363
           L+GE VPDAVNVQG  +AE++KPGLPL E+LGR+FT+LAG +A R+DVEV GEI  HDVK
Sbjct: 303 LSGEFVPDAVNVQGTGVAEEIKPGLPLTEKLGRVFTSLAGTIASRIDVEVRGEIAAHDVK 362

Query: 364 VLELSALKGVFEDVVDETVSYVNAPLFAQERGVEVRLTTSSESPEHRNVVIVRGTLSDGE 423
           VLEL+ALKGVF DVV++TV++VNAPL A+ERGVEV L TS +  + RN++ VRG L+DG+
Sbjct: 363 VLELAALKGVFADVVEDTVTFVNAPLLAKERGVEVNLVTSDDHSDWRNLISVRGVLADGQ 422

Query: 424 EVSVSGTLAGPKHLQKIVAIGEYDVDLALADHMVVLRYEDRPGVVGTVGRIIGEAGLNIA 483
            VSVSGTL GP+ ++K+V I  Y ++++L+DHMV L YEDRPG+VG VG ++G+A +NIA
Sbjct: 423 RVSVSGTLTGPRQVEKLVEINNYGMEISLSDHMVFLSYEDRPGIVGKVGALLGDAQVNIA 482

Query: 484 GMQVARATVGGEALAVLTVDDTVPSGVLAEVAAEIGATSARSVNL 528
           GMQV R   GG+AL  LTVD  VP  VLA +++EI A   R ++L
Sbjct: 483 GMQVIRDQEGGKALIALTVDSAVPDEVLASISSEIEADITRQIDL 527


Lambda     K      H
   0.315    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 838
Number of extensions: 33
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 529
Length adjustment: 35
Effective length of query: 494
Effective length of database: 494
Effective search space:   244036
Effective search space used:   244036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_017598160.1 D471_RS0108145 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.28779.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28779.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.