Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_017598176.1 D471_RS0108245 3-isopropylmalate dehydratase large subunit
Query= SwissProt::Q7TXH6
(473 letters)
>NCBI__GCF_000341125.1:WP_017598176.1
Length = 468
Score = 746 bits (1927), Expect = 0.0
Identities = 363/464 (78%), Positives = 408/464 (87%), Gaps = 1/464 (0%)
Query: 9 RTLAEKIWDDHIVVSGGGCAPDLIYIDLHLVHEVTSPQAFDGLRLAGRRVRRPELTLATE 68
RT+AEK+W++H+V G PDL+YIDLHLVHEVTSPQAF+GLRLAGR VRRP+LT+ATE
Sbjct: 3 RTMAEKVWEEHVVRRADG-EPDLLYIDLHLVHEVTSPQAFEGLRLAGRSVRRPDLTIATE 61
Query: 69 DHNVPTVDIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGPQLGLTQPG 128
DHNVPT ++ PIADPVSR QVETLR+NC++FG+RLH MGDI+QG+VHVVGPQLGLTQPG
Sbjct: 62 DHNVPTQNLLAPIADPVSRKQVETLRKNCSDFGVRLHPMGDIDQGVVHVVGPQLGLTQPG 121
Query: 129 MTIVCGDSHTSTHGAFGALAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGRLPDGVSAK 188
MTIVCGDSHTSTHGAFGALA GIGTS+VEHVLATQTLPL PFKTMAV V+G L GVSAK
Sbjct: 122 MTIVCGDSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLAPFKTMAVTVNGTLKPGVSAK 181
Query: 189 DIILALIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMVAPDETTYA 248
DIILA+IAKIGTGGGQG+VIEYRG AIESLSME RMT+CNMSIEAGARAGM+APD+TT+
Sbjct: 182 DIILAVIAKIGTGGGQGYVIEYRGEAIESLSMEARMTVCNMSIEAGARAGMIAPDQTTFD 241
Query: 249 FLRGRPHAPTGAQWDTALVYWQRLRTDVGAVFDTEVYLDAASLSPFVTWGTNPGQGVPLA 308
++RGR HAP G +D A+ +W+ LRTD GAVFD EV LDA LSPFVTWGTNPGQGVPL
Sbjct: 242 YIRGRDHAPKGEDFDAAVEHWKSLRTDEGAVFDAEVVLDADELSPFVTWGTNPGQGVPLD 301
Query: 309 AAVPDPQLMTDDAERQAAEKALAYMDLRPGTAMREIAVDAVFVGSCTNGRIEDLRVVAEV 368
A+VPDP D + R AAEKALAYMDL PGT MRE++VD VF+GSCTNGRIEDLR AE+
Sbjct: 302 ASVPDPASFADSSARAAAEKALAYMDLAPGTPMREVSVDTVFLGSCTNGRIEDLRTAAEI 361
Query: 369 LRGRKVADGVRMLIVPGSMRVRAQAEAEGLGEIFTDAGAQWRQAGCSMCLGMNPDQLASG 428
+RGRKVADGVRML+VPGSMRV+ QA EGLG +F +AGA+WR+AGCSMCLGMNPDQL G
Sbjct: 362 MRGRKVADGVRMLVVPGSMRVKEQANEEGLGRVFEEAGAEWREAGCSMCLGMNPDQLKPG 421
Query: 429 ERCAATSNRNFEGRQGAGGRTHLVSPAVAAATAVRGTLSSPADL 472
ER A+TSNRNFEGRQG GGRTHLVSP VAAATAVRGTLSSPADL
Sbjct: 422 ERSASTSNRNFEGRQGRGGRTHLVSPQVAAATAVRGTLSSPADL 465
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 855
Number of extensions: 29
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 468
Length adjustment: 33
Effective length of query: 440
Effective length of database: 435
Effective search space: 191400
Effective search space used: 191400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Align candidate WP_017598176.1 D471_RS0108245 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.19012.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19012.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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