Alignments for a candidate for leuD in Nocardiopsis lucentensis DSM 44048

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_017598177.1 D471_RS0108250 3-isopropylmalate dehydratase small subunit

Query= SwissProt::Q8NQV7
         (197 letters)



>NCBI__GCF_000341125.1:WP_017598177.1
          Length = 196

 Score =  247 bits (631), Expect = 9e-71
 Identities = 127/195 (65%), Positives = 145/195 (74%)

Query: 1   MEKFTTYTGVGVPLQRSNVDTDQIIPAVYLKRVTRTGFEDGLFSNWRQNDPNFVLNTDTY 60
           MEK   +TG  VPL+ SNVDTDQIIPAVYLKRV+RTGFEDGLF+ WR +DP+FVLN   Y
Sbjct: 1   MEKIDVHTGRAVPLRASNVDTDQIIPAVYLKRVSRTGFEDGLFAEWRGSDPDFVLNRPEY 60

Query: 61  KNGSVLVAGPDFGTGSSREHAVWALMDYGFRAVFSSRFADIFRGNSGKAGMLTGIMEQSD 120
              SVLVAGPDFGTGSSREHAVWAL DYGFRAV SSRFADIFRGNS K G+LT ++ Q  
Sbjct: 61  SGASVLVAGPDFGTGSSREHAVWALKDYGFRAVLSSRFADIFRGNSLKGGLLTILLPQEV 120

Query: 121 IELLWKLMEQTPGLELTVNLEKQIVTAGDVVISFEVDPYIRWRLMEGLDDAGLTLRKLDE 180
           IE LW+ +E  PG E+TV+L  + V A  V  SFE+D Y RWRLMEGLDD  LTLR  + 
Sbjct: 121 IEKLWETVEADPGTEVTVDLVNREVRAPGVQESFELDDYTRWRLMEGLDDIALTLRHTEG 180

Query: 181 IEDYEAKRPAFKPRT 195
           I  +E  R  + P T
Sbjct: 181 IGAFEETRKRWLPVT 195


Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 214
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 196
Length adjustment: 20
Effective length of query: 177
Effective length of database: 176
Effective search space:    31152
Effective search space used:    31152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_017598177.1 D471_RS0108250 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.4512.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4512.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.