Alignments for a candidate for asd in Nocardiopsis lucentensis DSM 44048

Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_017599040.1 D471_RS0113160 aspartate-semialdehyde dehydrogenase

Query= BRENDA::Q8KQ27
         (354 letters)



>NCBI__GCF_000341125.1:WP_017599040.1
          Length = 352

 Score =  438 bits (1127), Expect = e-128
 Identities = 228/351 (64%), Positives = 271/351 (77%), Gaps = 8/351 (2%)

Query: 3   PVLALVGATGAVGTVMIDIINNRETVPWGEIRLIASARSAGKKLTVRGEELTVIELTAEA 62
           P LA+VGATGAVGTVM+DI+  RE V WGEIRL+AS RSAGK L VRGE++ V  L  E 
Sbjct: 6   PTLAIVGATGAVGTVMLDILTQRENV-WGEIRLVASPRSAGKVLRVRGEDVVVQALAPEV 64

Query: 63  FDGVDVAMFDVPDEISAEWAPVAAARGAVAVDNSGAFRMDDDVPLVVPEVNADKVGERPR 122
           FDGVDVAMFDVPDE+S EWAP+AAARGAVAVDNSGAFRMD DVPLVVPEVNAD+V  RPR
Sbjct: 65  FDGVDVAMFDVPDEVSKEWAPIAAARGAVAVDNSGAFRMDADVPLVVPEVNADQVRNRPR 124

Query: 123 GIIANPNCTTLSMMAALGALHREFELKELVVASYQAVSGAGKEGVDRLYAELEAV-AGKP 181
           GII+NPNCTTLSM+ A+GALHR F + +LVV+SYQA SGAG+EG+D L  ++  V A + 
Sbjct: 125 GIISNPNCTTLSMIVAIGALHRAFGVTDLVVSSYQAASGAGQEGIDTLRDQMAKVSADRG 184

Query: 182 VGVSAGDVRKTLEAAGLSISDSPFPAPLAFNVVPSAGSYKGDGWYSEELKVRNESRKILG 241
           +   AGDVR  +   G      PFPAPLA+NVVP AGS K DGW SEELKVRNESRKILG
Sbjct: 185 IAEKAGDVRAAVGELG------PFPAPLAYNVVPWAGSLKEDGWASEELKVRNESRKILG 238

Query: 242 IPDLKVSATCVRVPVVTTHSLAVHATFAREVTVEEAHKVFEAQPTIVLVDDPENGVFPTP 301
           +PDL+VSATCVRVPV+TTHSLAVHATF++EVT + A ++  +   +V+ DDP  G FPTP
Sbjct: 239 LPDLRVSATCVRVPVITTHSLAVHATFSQEVTADAARELLGSAEGVVVQDDPAKGEFPTP 298

Query: 302 AEVVGEDPTYVGRVRQALDFPNTLDFLRVRGQPAQGAAAEHLRDAETLAPQ 352
           A+VVG DPT+VGR+RQ+LD P +LD         +GAA    + AE +A +
Sbjct: 299 ADVVGTDPTWVGRIRQSLDDPKSLDLFLCGDNLRKGAALNTAQIAEVVAQE 349


Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 420
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 352
Length adjustment: 29
Effective length of query: 325
Effective length of database: 323
Effective search space:   104975
Effective search space used:   104975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_017599040.1 D471_RS0113160 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.20513.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20513.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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