Alignments for a candidate for thrC in Nocardiopsis lucentensis DSM 44048

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_017599310.1 D471_RS0114685 threonine synthase

Query= curated2:Q58860
         (405 letters)



>NCBI__GCF_000341125.1:WP_017599310.1
          Length = 419

 Score =  246 bits (627), Expect = 1e-69
 Identities = 141/394 (35%), Positives = 223/394 (56%), Gaps = 17/394 (4%)

Query: 5   CIKCGKTYDVDEIIYTCE-CGGLLEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPVKD 63
           C +CG+ YD+    + CE C G LE+ YD+      V+   +      +WRY   LPV  
Sbjct: 22  CRECGERYDLTPR-FACEFCFGPLEVAYDF----GAVTRADIESGPNNIWRYRSLLPVPT 76

Query: 64  E-SKIVSLCEGGTPLYRCNNLEKELGIKELYVKNEGANPTGSFKDRGMTVGVTRANELGV 122
             +++ ++  G TPL R + L  ELG+  L+VK++  NPT SFKDR + + V  A   G 
Sbjct: 77  NVAELPNMNPGLTPLVRADRLAAELGLDSLHVKDDSGNPTHSFKDRVVAIAVEAARTFGF 136

Query: 123 EVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDA 182
             + C+STGN + ++ A +AR+G +  V +P G +  GK+  A  YG KV+ + GN+DD 
Sbjct: 137 TTLSCSSTGNLAGAVGAAAARAGFESCVFIPAG-LEEGKVVMAAVYGGKVVAIDGNYDDV 195

Query: 183 LDMVKQL----AKEKLIYLLNSINPFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNI 238
                +L    A E   ++  ++ P+  EG KT+A+EI +QL W++P+++++P+ +   +
Sbjct: 196 NRFCSELIGDPAGEGWGFVNVNLRPYYGEGSKTLAYEIAEQLGWRLPEQIVIPIASGSQL 255

Query: 239 SAIWKGFKEFEITGIIDELP-KMTGIQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRI 297
           + I KGF+E    G++ + P ++ G QA G  P+ +A+ +   D+I    P+TIA ++ I
Sbjct: 256 TKIDKGFQELIKLGLVQDRPYRIFGAQATGCSPVAKAW-EAGHDVIQPVKPDTIAKSLAI 314

Query: 298 GNPVNAPKALDAIYSSGGYAEAVTDEEIVEAQKLLARKEGIFVEPASASSIAGLKKLLEE 357
           GNP + P  LD    +GG  E V+D E+V++  LLAR EGIF E A   +   L+KL+ E
Sbjct: 315 GNPADGPYVLDIAQRTGGSVEHVSDAEVVDSINLLARTEGIFAETAGGVTTGVLRKLVRE 374

Query: 358 GIIDRDERIVCITTGHGLKD---PDAAIRASEEP 388
           G +D     V + TG GLK     DA + A+  P
Sbjct: 375 GRLDPKAETVVLNTGDGLKTLNAVDAGVTATIAP 408


Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 474
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 419
Length adjustment: 31
Effective length of query: 374
Effective length of database: 388
Effective search space:   145112
Effective search space used:   145112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_017599310.1 D471_RS0114685 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.25345.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25345.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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