Alignments for a candidate for trpD_2 in Nocardiopsis lucentensis DSM 44048

Align anthranilate phosphoribosyltransferase (EC 2.4.2.18) (characterized)
to candidate WP_017600026.1 D471_RS0118695 anthranilate phosphoribosyltransferase

Query= BRENDA::A5U4M0
         (370 letters)



>NCBI__GCF_000341125.1:WP_017600026.1
          Length = 362

 Score =  335 bits (858), Expect = 1e-96
 Identities = 186/349 (53%), Positives = 226/349 (64%), Gaps = 5/349 (1%)

Query: 16  SPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPT 75
           S    A +  +W  ++  L     L+    AWAM++IM+G+A  AQIA FA+A+  K  +
Sbjct: 9   SDDQSAVTERTWSNLITALLGGVTLSAADTAWAMNEIMSGSATDAQIAGFAIALRAKGES 68

Query: 76  ADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVK 135
             EV  LA  ML +A  +   +VP   +D+VGTGGD  +TVN+STMAAIV +AAG  VVK
Sbjct: 69  VSEVTGLARGMLDNAVRV---SVPGPTLDIVGTGGDRAHTVNVSTMAAIVASAAGARVVK 125

Query: 136 HGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRRE 195
           HGNRAASS  G AD LE LGV +DL P L AR   E GI FCFAP FHPS R+AA  RRE
Sbjct: 126 HGNRAASSSCGTADVLERLGVVLDLPPRLTARVAEEAGITFCFAPLFHPSLRYAAKPRRE 185

Query: 196 IGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTT 255
           + VPTVFN LGPLTNPARP    IG     + EV+AGVFA R SS LV  GDDGLDELTT
Sbjct: 186 LAVPTVFNFLGPLTNPARPTTSAIGVFDERMCEVIAGVFAGRGSSALVFRGDDGLDELTT 245

Query: 256 TTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDA 315
           +TTST+W V+ G   +   DPA  G  R+  D L GGD + NA AVR +L G RGPVRDA
Sbjct: 246 STTSTVWVVSGGEARRERLDPADLGIGRSAPDALRGGDVEFNAQAVRDLLAGRRGPVRDA 305

Query: 316 VVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWV 364
           V+LNA  A+ A  G+      + A   G  RA+AA+D+GAAE+ LA WV
Sbjct: 306 VLLNAGAALAAVDGV--EGSLVEAVRAGYERAAAAVDSGAAERALAAWV 352


Lambda     K      H
   0.318    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 330
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 362
Length adjustment: 30
Effective length of query: 340
Effective length of database: 332
Effective search space:   112880
Effective search space used:   112880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_017600026.1 D471_RS0118695 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.22663.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22663.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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