Alignments for a candidate for hisF in Nocardiopsis lucentensis DSM 44048

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate WP_017600194.1 D471_RS0119655 imidazole glycerol phosphate synthase subunit HisF

Query= SwissProt::Q7SIB9
         (252 letters)



>NCBI__GCF_000341125.1:WP_017600194.1
          Length = 257

 Score =  286 bits (731), Expect = 4e-82
 Identities = 155/257 (60%), Positives = 182/257 (70%), Gaps = 7/257 (2%)

Query: 1   MSLAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEER 60
           MSLA R++PCLDV AGRVVKGVNF NLRDAGDPVE A  YD  GADEL FLD++A+  +R
Sbjct: 1   MSLAIRVIPCLDVDAGRVVKGVNFENLRDAGDPVELAGTYDAGGADELTFLDVTASSGDR 60

Query: 61  AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADH 120
               DVV R A++VFIPLTVGGGVR+ +D   LL +GADKV VN+AA+ RPELI E+A+ 
Sbjct: 61  ETTYDVVRRTADQVFIPLTVGGGVRTTDDVDTLLRAGADKVGVNTAAIARPELIGEIAER 120

Query: 121 FGAQAVVLAIDAR--WRGDFP-----EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS 173
           FG Q +VL+ D R    GD P     EV   GGR  TG+ A+EW  +   LGAGEILL S
Sbjct: 121 FGRQVLVLSADVRRVRDGDEPTPSGFEVTTHGGRRGTGIDALEWCERAAALGAGEILLNS 180

Query: 174 MDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEI 233
           MD DGTKEG+DL L R V   V VP+IASGGAG +EHF+ A  AGA+A LAA+VFHFGE 
Sbjct: 181 MDADGTKEGFDLELIRAVRARVDVPLIASGGAGAVEHFVPAVAAGADAVLAATVFHFGEF 240

Query: 234 PIPKLKRYLAEKGVHVR 250
            I  +K  L E G  VR
Sbjct: 241 TIADVKASLREAGYAVR 257


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 270
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 257
Length adjustment: 24
Effective length of query: 228
Effective length of database: 233
Effective search space:    53124
Effective search space used:    53124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_017600194.1 D471_RS0119655 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.15044.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15044.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.