Alignments for a candidate for thrC in Nocardiopsis lucentensis DSM 44048

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_017600364.1 D471_RS0120560 threonine synthase

Query= BRENDA::P9WG59
         (360 letters)



>NCBI__GCF_000341125.1:WP_017600364.1
          Length = 352

 Score =  469 bits (1208), Expect = e-137
 Identities = 235/348 (67%), Positives = 279/348 (80%), Gaps = 1/348 (0%)

Query: 12  WPGVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDR 71
           W GV+  YRDRLPV ++   VTL EGGTPL+ AT +S+ TGC +HLKVEGLNPTGSFKDR
Sbjct: 5   WRGVVEEYRDRLPVNENTPVVTLQEGGTPLLPATRVSELTGCDVHLKVEGLNPTGSFKDR 64

Query: 72  GMTMAVTDALAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMH 131
           GMTMA+T A   G +AV+CASTGNTSASAAAYA RAG+TCAVL+PQGKIAMGKLAQA++H
Sbjct: 65  GMTMAITKAAEEGAKAVICASTGNTSASAAAYAIRAGMTCAVLVPQGKIAMGKLAQALVH 124

Query: 132 GAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVH 191
           GA+++Q+DGNFDDCLELARK++ D+P ++LVNSVNP R++GQKTAAFEIVD LG APD+H
Sbjct: 125 GARLLQVDGNFDDCLELARKLSVDYP-VALVNSVNPYRLQGQKTAAFEIVDALGDAPDIH 183

Query: 192 ALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIR 251
            +PVGNAGNI+AYW GYTEY + G+  + PRM G QA+G+AP+V G PV+ P TIATAIR
Sbjct: 184 CIPVGNAGNISAYWMGYTEYAEDGVSTRRPRMFGFQASGSAPIVDGAPVTSPSTIATAIR 243

Query: 252 IGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAID 311
           IG+PASW  A +A+ +S G     +D EI+AAY L+A  EGVFVE ASAAS+AGLLKA  
Sbjct: 244 IGNPASWKLAEQARDESGGLIDKVTDREIMAAYKLLAAEEGVFVELASAASVAGLLKAAQ 303

Query: 312 DGWVARGSTVVCTVTGNGLKDPDTALKDMPSVSPVPVDPVAVVEKLGL 359
            G V RGS VVCTVTGNGLKDPD AL    S + VPVD  A  E LGL
Sbjct: 304 AGRVPRGSRVVCTVTGNGLKDPDWALAGAASATTVPVDARAAAEALGL 351


Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 441
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 352
Length adjustment: 29
Effective length of query: 331
Effective length of database: 323
Effective search space:   106913
Effective search space used:   106913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_017600364.1 D471_RS0120560 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.25752.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25752.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.