Alignments for a candidate for hisG in Nocardiopsis lucentensis DSM 44048

Align ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 (characterized)
to candidate WP_017601183.1 D471_RS0125195 ATP phosphoribosyltransferase

Query= SwissProt::P9WMN1
         (284 letters)



>NCBI__GCF_000341125.1:WP_017601183.1
          Length = 284

 Score =  306 bits (785), Expect = 3e-88
 Identities = 157/283 (55%), Positives = 206/283 (72%), Gaps = 3/283 (1%)

Query: 1   MLRVAVPNKGALSEPATEILAEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIAIYVGSG 60
           +LR+AVPNKG LSEPA E+L EAGYR+R  S+DL ++DP N+ EFFFLRPKDIA+YVG G
Sbjct: 4   LLRIAVPNKGQLSEPAVEMLREAGYRQRKSSRDLVMVDPDNDTEFFFLRPKDIAVYVGEG 63

Query: 61  ELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLV 120
            L  GITGRD++ DSGA V E LALGFG+S+FR+AAP G +    DL G RIAT++  L+
Sbjct: 64  ILQAGITGRDMLLDSGAAVDEVLALGFGASTFRFAAPNGASMKVCDLNGKRIATSFDGLL 123

Query: 121 RKDLATKGIEATVIRLDGAVEISVQLGVADAIADVVGSGRTLSQHDLVAFGEPLCDSEAV 180
           R  L  +G++A VI LDGAVE SVQLGVADA+ADVV +G TL Q  +  FGEP+  SEAV
Sbjct: 124 RSYLDEQGVDARVIHLDGAVESSVQLGVADAVADVVSTGTTLRQAGMETFGEPILVSEAV 183

Query: 181 LIERAGTDGQDQTEARDQLVARVQGVVFGQQYLMLDYDCPRSALKKATAITPGLESPTIA 240
           +I  +G     + E   QL+ R++GV+  + Y+M++YD     L+ A A+TPG+E PT++
Sbjct: 184 VIRPSGAGEDPKIE---QLLRRLRGVLVARDYVMMEYDVHAEHLEPAVALTPGMEGPTVS 240

Query: 241 PLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILASDIRFCR 283
           PL    WVA+R++VPR+D   IMD+L  +GA+AIL +DI  CR
Sbjct: 241 PLHREGWVAVRSMVPRQDAQRIMDDLWHLGARAILVTDIYACR 283


Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 292
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 284
Length adjustment: 26
Effective length of query: 258
Effective length of database: 258
Effective search space:    66564
Effective search space used:    66564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_017601183.1 D471_RS0125195 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.14725.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14725.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.