Alignments for a candidate for ilvC in Clostridium tyrobutyricum FAM22553

Align Ketol-acid reductoisomerase (NAD(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.382 (characterized)
to candidate WP_017751808.1 PN53_RS01890 ketol-acid reductoisomerase

Query= SwissProt::K4LVZ1
         (332 letters)



>NCBI__GCF_000816635.1:WP_017751808.1
          Length = 337

 Score =  431 bits (1108), Expect = e-125
 Identities = 202/329 (61%), Positives = 258/329 (78%)

Query: 1   MKIYYDQDADLQYLDGKTVAVIGYGSQGHAQSQNLRDSGVKVVVADIPSSENWKKAEEAQ 60
           +K+YYD+DA+L  L GK +AV+G+GSQGHAQ+ NL+DSG+ V++     S++WKKAE+  
Sbjct: 4   LKVYYDEDANLDLLKGKKIAVLGFGSQGHAQALNLKDSGLDVIIGLYKGSKSWKKAEDYG 63

Query: 61  FQPLTADEAAREADIIQILVPDEKQAALYRESIAPNLRPGKALVFSHGFNIHFKQIVPPP 120
           F+     EA ++A ++ +L+PDEKQ  +Y ES+  NL  G AL+FSHGFNIHF QIVP  
Sbjct: 64  FKVYEVAEAVKQAQLVAMLLPDEKQKQIYEESVRDNLEDGDALLFSHGFNIHFNQIVPAK 123

Query: 121 DVDVFMVAPKGPGHLVRRMYEEGAGVPSLVAVEQDYSGQALNLALAYAKGIGATRAGVIQ 180
           ++DV M+APKGPGH+VR+ Y EG GVP L AV QDY+G+  + ALAY KG+G TR GV+ 
Sbjct: 124 NIDVLMIAPKGPGHIVRKQYTEGGGVPCLYAVYQDYTGKGKDYALAYGKGVGGTRGGVMN 183

Query: 181 TTFKEETETDLFGEQAVLCGGITELIRAGFDTLVDAGYQPEIAYFECLHEMKLIVDLIYE 240
           TTFK ETETDLFGEQAVLCGGI  LI+AGFDTLV+AGY PE A+FEC HEMK+IVDL+YE
Sbjct: 184 TTFKIETETDLFGEQAVLCGGICSLIQAGFDTLVEAGYAPENAFFECFHEMKMIVDLMYE 243

Query: 241 GGISTMRYSISDTAEYGDLTRGKRIITEATREEMKKILKEIQDGVFAREWLLENQVGRPV 300
           GG+S MR+SISDTAEYGD   G R+I ++ R+EMKK+LKEIQDG FA++WLLEN++GRP 
Sbjct: 244 GGMSKMRHSISDTAEYGDYKIGNRLINDSVRKEMKKVLKEIQDGTFAKDWLLENKIGRPT 303

Query: 301 YNALRRKEQNHLIETVGARLRGMMPWLKK 329
             A RR E +  +E VG RLRGMM W+++
Sbjct: 304 LEARRRIEADTQLEKVGKRLRGMMSWIEE 332


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 370
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 337
Length adjustment: 28
Effective length of query: 304
Effective length of database: 309
Effective search space:    93936
Effective search space used:    93936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_017751808.1 PN53_RS01890 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.27393.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27393.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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