Alignments for a candidate for ilvA in Clostridium tyrobutyricum FAM22553

Align L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 (characterized)
to candidate WP_017752170.1 PN53_RS07185 threonine ammonia-lyase

Query= SwissProt::Q9WYJ1
         (401 letters)



>NCBI__GCF_000816635.1:WP_017752170.1
          Length = 403

 Score =  389 bits (998), Expect = e-112
 Identities = 195/399 (48%), Positives = 282/399 (70%), Gaps = 1/399 (0%)

Query: 2   ITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAH 61
           +TL+D+ EA+  +K++  +T L YS   S  +G E+Y+K ENLQ TG+FK+RGA NKI+ 
Sbjct: 5   LTLKDVLEAKERIKDICVKTKLIYSPEFSRESGNEVYIKPENLQITGAFKLRGASNKISK 64

Query: 62  LSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPRYAPLSKITKTRNLGAQVILEG 121
           LS+E++++G++A+SAGNHAQGVA +AQ  GI ATIVMP   P  K+  T+N GA ++L+G
Sbjct: 65  LSDEQKQKGLIASSAGNHAQGVAYSAQKLGIKATIVMPETTPFIKVQSTKNYGANIVLKG 124

Query: 122 NIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGGL 181
            ++DEAYE A R++E+ G  FVHPFND  V+AGQGTI LEI+++L DV+ ++VP+GGGGL
Sbjct: 125 KVYDEAYEEAKRLKEENGYTFVHPFNDVDVMAGQGTIALEIIDELKDVDAIIVPIGGGGL 184

Query: 182 ISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTF 241
           ISG+SVA KS+NP++K+IGVQ E    M  S   G+    +   T+ADG AVK+PGDLTF
Sbjct: 185 ISGISVAAKSINPDIKIIGVQAEGANPMKISFDTGKLTYADKVDTIADGAAVKQPGDLTF 244

Query: 242 ELVKKYVDEMVAVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNKLDVKGKKVAIVIS 301
           E++K+YVDE+V V+++E+ +A+  +LE+ K++AE  GA+ +AA L +L+ KGKKV  +IS
Sbjct: 245 EVIKEYVDEIVTVSDQELMEAVFVILEKHKLIAEATGAMSLAA-LKRLNFKGKKVVSLIS 303

Query: 302 GGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGALKELLGIVAELGANVLSVFHNRSA 361
           GGNIDV  I  ++NKGL   GR       + D PG L ++  I+AE GANV+ + HN+  
Sbjct: 304 GGNIDVVTIASLLNKGLFSRGRIFCFSVNLQDTPGQLLKIAQILAEEGANVIKLEHNQFK 363

Query: 362 KEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVRIV 400
               +    +E+ +ET   +H+E+I + L   GY+V  V
Sbjct: 364 SVDRLKHVGLEVTVETNGYEHIEDIVKKLNDHGYDVHRV 402


Lambda     K      H
   0.317    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 372
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 403
Length adjustment: 31
Effective length of query: 370
Effective length of database: 372
Effective search space:   137640
Effective search space used:   137640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_017752170.1 PN53_RS07185 (threonine ammonia-lyase)
to HMM TIGR01127 (ilvA: threonine ammonia-lyase (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.4759.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4759.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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