Alignments for a candidate for trpD_2 in Clostridium tyrobutyricum FAM22553

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_017895263.1 PN53_RS11035 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000816635.1:WP_017895263.1
          Length = 336

 Score =  263 bits (673), Expect = 4e-75
 Identities = 138/334 (41%), Positives = 210/334 (62%), Gaps = 1/334 (0%)

Query: 7   QALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMRE 66
           +A+++ +   ++  +E  ++M  IM G    ++VS +L  L++K E+I EI G A  MR+
Sbjct: 4   EAIKKVVSGNDLSENEAENVMNSIMSGREPISIVSGLLMALKMKGESISEITGCARAMRK 63

Query: 67  FSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSAD 126
            +  V++    + +D  GTGGDG  TFNIST A  +AAA G KVAKHGN++VSSKSGSAD
Sbjct: 64  MAVPVKLKSE-YAIDTCGTGGDGGKTFNISTAASIIAAAAGIKVAKHGNKAVSSKSGSAD 122

Query: 127 ALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLT 186
            L+ LG  IEL   +V  ++   G+GF++AP++H AMK VA +R+E+GVRTIFNILGP+T
Sbjct: 123 VLKELGINIELDKSKVEKAIDNIGMGFLFAPMYHSAMKNVAGIRKELGVRTIFNILGPIT 182

Query: 187 NPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQ 246
           NPA     ++GV+  +L    A+ L  LG ERA+VV G DG+DE++  A T V EL+DG+
Sbjct: 183 NPAFVKGQILGVYKKELTHHIAKTLMNLGCERAMVVHGADGLDEITTTALTYVSELKDGK 242

Query: 247 VHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVAG 306
           V +Y + PE++GI  ++  ++      E+  ++L +L    G   DIV LN+ AALYV  
Sbjct: 243 VRDYTIDPEEYGIEKASYEDISGGTPKENADIILDILKGKKGRKRDIVVLNSAAALYVGK 302

Query: 307 VADSIADGIVRARQVLADGSARACLDAYVAFTQQ 340
             ++I  GI    +++    A   L   + ++++
Sbjct: 303 KVENIKQGIDNVNEIIDSNKAYEKLQEMLNYSRE 336


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 263
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 336
Length adjustment: 28
Effective length of query: 317
Effective length of database: 308
Effective search space:    97636
Effective search space used:    97636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_017895263.1 PN53_RS11035 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.1379.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1379.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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