Alignments for a candidate for gatB in Clostridium tyrobutyricum FAM22553

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_017895374.1 PN53_RS03015 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_000816635.1:WP_017895374.1
          Length = 476

 Score =  473 bits (1217), Expect = e-138
 Identities = 233/477 (48%), Positives = 335/477 (70%), Gaps = 2/477 (0%)

Query: 1   MNFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAM 60
           M FE+ IGLEVHVEL T +K++    T FGA+ N+    + LG PG LP LN++AVE+A+
Sbjct: 1   MKFESTIGLEVHVELLTNTKMYCGCSTEFGAKPNSHVCPVCLGLPGALPKLNRKAVEYAV 60

Query: 61  KAAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGG-KTKRIGIT 119
           KA +ALNC I   ++ DRKNYFYPD PK YQI+Q   P+  +G+I++E  G KT++I I 
Sbjct: 61  KAGIALNCTINNHSRMDRKNYFYPDCPKNYQITQDKFPLCRDGYIDLETNGTKTRKIRIE 120

Query: 120 RLHLEEDAGKLTHTGDGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYTG 179
           R+H+EEDA KL HT  G +L+D+NR G PL+EIVS+PDI+TP+EA  YL+KLKSI+Q  G
Sbjct: 121 RIHIEEDAAKLFHTDSG-TLIDYNRAGVPLIEIVSKPDIKTPKEATLYLQKLKSILQCIG 179

Query: 180 VSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLLSG 239
           VSDCKME+GSLRCD NIS++ + + + G KTE+KN+NSF  ++K LE+E KRQ + + SG
Sbjct: 180 VSDCKMEQGSLRCDGNISIKKMEESKLGVKTEIKNVNSFKGLEKALEYEYKRQLKTIQSG 239

Query: 240 FFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPDE 299
             ++QETRR+D+   KT +MR KE ++DYRYFPE DLV + I DE  E+++ +IPELP  
Sbjct: 240 EILKQETRRWDDIKSKTFVMRNKEHANDYRYFPEGDLVAINISDEEIEKIRHTIPELPYN 299

Query: 300 RRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKE 359
           R  R++ ++  +  DA VLT+  + ADFFE T +     K A+NW+MG++   +N   + 
Sbjct: 300 RAARFVNQMHISRQDAYVLTMDMDTADFFENTSKLVERPKSAANWIMGDIERLVNETSRS 359

Query: 360 LADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQISDEGVL 419
           + ++  TP+ L+ +IKL++ G IS+ I K V +E+   G + ++I+K+  L Q +    +
Sbjct: 360 IKELKFTPKQLSELIKLVDSGVISNNIGKIVMEEMFRAGKNPDEIIKKNKLDQNNSRDEI 419

Query: 420 LKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEIKKR 476
             +V   +D NP+S+ED+KNGK RA  F+VG IMK +KG+ANP +VN+++ EE  KR
Sbjct: 420 YGIVRRIIDENPKSLEDYKNGKKRATKFIVGLIMKDTKGKANPKIVNELVNEEFNKR 476


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 611
Number of extensions: 24
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 476
Length adjustment: 33
Effective length of query: 443
Effective length of database: 443
Effective search space:   196249
Effective search space used:   196249
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_017895374.1 PN53_RS03015 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.28144.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28144.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.