Alignments for a candidate for lysA in Clostridium tyrobutyricum FAM22553

Align diaminopimelate decarboxylase subunit (EC 4.1.1.20) (characterized)
to candidate WP_017895586.1 PN53_RS02530 diaminopimelate decarboxylase

Query= metacyc::MONOMER-6601
         (439 letters)



>NCBI__GCF_000816635.1:WP_017895586.1
          Length = 432

 Score =  408 bits (1048), Expect = e-118
 Identities = 203/417 (48%), Positives = 285/417 (68%)

Query: 15  LEIGGVDALYLAEKYGTPLYVYDVALIRERAKSFKQAFISAGLKAQVAYASKAFSSVAMI 74
           L I GV  L L  K+GTPLYV D  L+R++   + ++F +     +VAYA KAF +++M 
Sbjct: 14  LYIDGVSTLDLVNKFGTPLYVIDEKLVRDKCSRYYKSFKADKGLNKVAYAGKAFLTLSMC 73

Query: 75  QLAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMALEHRIGCIVVDNFY 134
           QL + EGL LDVVSGGELYTA  + FP E+I+FHGNNK+ +E++MA+   +G  VVDN  
Sbjct: 74  QLIKSEGLCLDVVSGGELYTAYKSKFPMEKIYFHGNNKTLDEIKMAVRLGVGRFVVDNIE 133

Query: 135 EIALLEDLCKETGHSIDVLLRITPGVEAHTHDYITTGQEDSKFGFDLHNGQTERAIEQVL 194
           E+  +  +  E     D+LLRITPG+EAHTHDYI TGQ DSKFGF +   + E A+++ L
Sbjct: 134 EMEKINSVAIEENKIQDILLRITPGIEAHTHDYIKTGQIDSKFGFSILGNKAEDAVKKAL 193

Query: 195 QSEHIQLLGVHCHIGSQIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLNLGGGFGIRYT 254
           +  +I+  G+H HIGSQIF+   +    E +   + + +  +    + L+LGGGFGI Y+
Sbjct: 194 ELSNIKFTGLHSHIGSQIFEVVPYCHEVEVMLSLVKDIQYKFKCDVEELDLGGGFGIYYS 253

Query: 255 EDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVGDAGTTLYTVGSQKEVPG 314
           + D P    E+   I+E+ ++ A      +P + IEPGRS++G+AGTTLYTVG+ K +P 
Sbjct: 254 DGDNPKPIEEFCSIILESAEKKAKDLNIKLPALVIEPGRSIIGNAGTTLYTVGAIKNIPN 313

Query: 315 VRQYVAVDGGMNDNIRPALYQAKYEAAAANRIGEAHDKTVSIAGKCCESGDMLIWDIDLP 374
           +R+YV+VDGGM DNIRP+LY+A YE A AN +   + + V+IAGK CESGD+LI +++LP
Sbjct: 314 IRKYVSVDGGMADNIRPSLYRADYECAVANNMSSDYTEKVTIAGKFCESGDILINEVELP 373

Query: 375 EVKEGDLLAVFCTGAYGYSMANNYNRIPRPAVVFVENGEAHLVVKRETYEDIVKLDL 431
           ++  GD+LAVF TGAYGYSMA+NYN+  RPAVVFV  G   LV KR++ +DI+  +L
Sbjct: 374 KINSGDILAVFSTGAYGYSMASNYNKAERPAVVFVNEGMTSLVCKRQSLQDIISGEL 430


Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 536
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 432
Length adjustment: 32
Effective length of query: 407
Effective length of database: 400
Effective search space:   162800
Effective search space used:   162800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_017895586.1 PN53_RS02530 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.32169.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32169.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.