Alignments for a candidate for leuD in Desulfovibrio oxyclinae DSM 11498

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_018123430.1 B149_RS0101710 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_000375485.1:WP_018123430.1
          Length = 164

 Score =  171 bits (434), Expect = 4e-48
 Identities = 86/162 (53%), Positives = 113/162 (69%)

Query: 5   IKGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFG 64
           + G   K G+++DTDAI+PAR+LV T  EEL +  M+G +  +  +VK  DIIV G+NFG
Sbjct: 3   VTGNAHKVGDHIDTDAIIPARFLVTTDAEELGRNCMSGLEEGWVDRVKENDIIVAGENFG 62

Query: 65  CGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNL 124
           CGSSREHAP+ + GAGI  V+A+SFARIFYRN  N GL L+E      K+ +G EL V+ 
Sbjct: 63  CGSSREHAPISILGAGIPVVVAKSFARIFYRNGFNKGLVLLEVGDDINKLGDGHELTVDT 122

Query: 125 ETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKMAE 166
           E GEI N TTG+V+K   +P FM  IL+AGGL+ Y + K+AE
Sbjct: 123 ENGEITNNTTGDVVKCAPVPSFMQGILDAGGLVEYARAKLAE 164


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 164
Length adjustment: 18
Effective length of query: 150
Effective length of database: 146
Effective search space:    21900
Effective search space used:    21900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_018123430.1 B149_RS0101710 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.4076.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4076.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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