Alignments for a candidate for leuB in Desulfovibrio oxyclinae DSM 11498

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_018123431.1 B149_RS0101715 3-isopropylmalate dehydrogenase

Query= SwissProt::Q56268
         (358 letters)



>NCBI__GCF_000375485.1:WP_018123431.1
          Length = 355

 Score =  426 bits (1096), Expect = e-124
 Identities = 219/354 (61%), Positives = 272/354 (76%), Gaps = 2/354 (0%)

Query: 3   KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLA 62
           KI I AGDGIGPEIVA   +VLD V +        +E L+GG A+DA+  PLP ++++  
Sbjct: 2   KICILAGDGIGPEIVAQGVKVLDKVGEKFGCTFEYSEALIGGVAIDATGGPLPDSTVERC 61

Query: 63  MAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPE 122
             ADAV+LGAVGGP+WD   P+ RPE+GLL +RK + L+ANLRPA +FPQL  A  LRP+
Sbjct: 62  KEADAVLLGAVGGPKWDTIDPSIRPEKGLLGIRKAMGLFANLRPAVLFPQLKHACYLRPD 121

Query: 123 LVRD-VDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGR 181
           +V + +D++VVRELTG IYFG+PR    I+G+R G+NTMVY E EIRRIA VAF AA+ R
Sbjct: 122 IVENGLDVMVVRELTGGIYFGEPRLEGEIEGERYGYNTMVYREHEIRRIARVAFEAARKR 181

Query: 182 RKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTG 241
             ++CSVDKANVL+ +R+WR+VV +   +Y DV LSHMYVDNAAMQL+R P QFDV++TG
Sbjct: 182 GGRVCSVDKANVLDVSRVWRDVVVDEHAEYADVELSHMYVDNAAMQLVRDPGQFDVIVTG 241

Query: 242 NMFGDILSDEASQLTGSIGMLPSASLG-EGRAMYEPIHGSAPDIAGQDKANPLATILSVA 300
           N+FGDILSDEA+ +TGSIGMLPSASLG +G  +YEPIHGSAPDIAGQDKANPLATILS+A
Sbjct: 242 NLFGDILSDEAAAITGSIGMLPSASLGADGPGLYEPIHGSAPDIAGQDKANPLATILSIA 301

Query: 301 MMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354
           MMLRHS++    A  +E AVQ+ L+QG RT DI   G   +GTKAMGAAV+  L
Sbjct: 302 MMLRHSMDMAEEADCIEQAVQKTLEQGYRTGDIMEQGAKAVGTKAMGAAVLENL 355


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 433
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 355
Length adjustment: 29
Effective length of query: 329
Effective length of database: 326
Effective search space:   107254
Effective search space used:   107254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_018123431.1 B149_RS0101715 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.4640.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4640.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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