Alignments for a candidate for cimA in Desulfovibrio oxyclinae DSM 11498

Align (R)-citramalate synthase (EC 2.3.3.21) (characterized)
to candidate WP_018123594.1 B149_RS0102555 citramalate synthase

Query= reanno::DvH:207383
         (538 letters)



>NCBI__GCF_000375485.1:WP_018123594.1
          Length = 533

 Score =  593 bits (1529), Expect = e-174
 Identities = 301/528 (57%), Positives = 386/528 (73%), Gaps = 4/528 (0%)

Query: 4   QIHLYDTTLRDGSQSEDINLNTPDKLKIALRLDELGIAYIEGGWPGSNPVDVAFFKEIRN 63
           +I +YDTTLRDG+Q+E++NL T DK++IA +LDELG+ YIEGGWPGSNP D  FF EI  
Sbjct: 3   RIAIYDTTLRDGTQAEELNLTTKDKVRIAAKLDELGVHYIEGGWPGSNPTDKQFFDEIAE 62

Query: 64  YNLKQAKISAFGSTHHPSHTAENDPNLKAIAAARTDAAAIFGKSCERHAREALRLDGRRN 123
           +  K A I+AFGST +P    ++DP  +++     +   IFGK+ + HA  AL +D  RN
Sbjct: 63  HTFKNASIAAFGSTFNPKADPDSDPIFQSLLTCGAEVFTIFGKTWDLHATLALNIDTERN 122

Query: 124 LDIIHDSIAFLKKQVAEVFFDAEHFFDGYRHNAAYALEVLRRAHEAGGDVLVLCDTNGGT 183
           ++II  S+A L+    EVFFDAEHFFDG+R N  +AL  L  AHEAG DVLVLCDTNGG+
Sbjct: 123 IEIIRQSVAHLRPHAREVFFDAEHFFDGFRANPEFALSCLEAAHEAGADVLVLCDTNGGS 182

Query: 184 LPHEVHDIVTAVREQLPEAKLGIHAHNDCEVAVANSIAAVQAGAVQVQGTMNGVGERCGN 243
           LP+++ + V AVR ++P A +GIHAHND E+AVANS+ A++ GAV VQGTMNG GERCGN
Sbjct: 183 LPYQIAEGVNAVRTRIPNAAVGIHAHNDGELAVANSLEAIRHGAVHVQGTMNGYGERCGN 242

Query: 244 ANLSSVIPILELKSAGAYACLPEGRLQQLTAVSSYVSEVTNLPPFSRQPFVGRSAFAHKG 303
           ANL S+IP LELK       +    + +LT VS Y+SE+ NL PF RQPFVG SAFAHKG
Sbjct: 243 ANLCSIIPNLELKL--GMESIGAENMSRLTEVSHYISEIANLRPFMRQPFVGASAFAHKG 300

Query: 304 GVHVSAVNRNATLYEHITPESVGNHQRVLITELAGRSNIVSLARRFGFHLDKDEPVVKGL 363
           GVHVSAV +++  YEHI P  VGN QRVL+++LAGRSN++  A +FG  L+K +P +  L
Sbjct: 301 GVHVSAVRKDSRTYEHIKPTDVGNMQRVLLSDLAGRSNLLHKAEQFGHPLEKGDPRLDQL 360

Query: 364 MNELKKKASLGYDYAAAEASVELLLLRKLARRGVREFFKLIQFRVLESKQENDLEPMSEA 423
           + ELK + S G++Y+ AEAS EL+  + ++ R    +FK   F V+++K+E D EP SEA
Sbjct: 361 VRELKLRESEGFEYSVAEASFELMFHKIVSGRHF-NYFKFRNFFVVDAKREEDAEPFSEA 419

Query: 424 SVMVEVEGIIEHTAATGRGPVNALDNALRKALSSFYPRIREMRLLDFKVRVLTGTETD-G 482
           +VMV V    EHTAATG GPVNALD ALRKAL  FYP + ++RLLDFKVRVL+G   D G
Sbjct: 420 TVMVHVGDQEEHTAATGMGPVNALDRALRKALERFYPSLADVRLLDFKVRVLSGAVRDTG 479

Query: 483 GTASTVRVLIESGDADSRWVTVGVSYNIIEASWQALADSMTYKLYKDE 530
           GTAS VRVL+ESGD+  RW TVGVS+NIIEASWQA+ DS  YKL++++
Sbjct: 480 GTASFVRVLVESGDSHERWTTVGVSHNIIEASWQAVVDSYNYKLFRED 527


Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 795
Number of extensions: 34
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 533
Length adjustment: 35
Effective length of query: 503
Effective length of database: 498
Effective search space:   250494
Effective search space used:   250494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_018123594.1 B149_RS0102555 (citramalate synthase)
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))

Software error:

../bin/blast/fastacmd -i /tmp/list.1038.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1038.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.