Alignments for a candidate for ilvI in Desulfovibrio oxyclinae DSM 11498

Align Acetolactate synthase isozyme 2 large subunit; AHAS-II; ALS-II; Acetohydroxy-acid synthase II large subunit; EC 2.2.1.6 (characterized)
to candidate WP_018125050.1 B149_RS0109980 acetolactate synthase large subunit

Query= SwissProt::P0DP90
         (548 letters)



>NCBI__GCF_000375485.1:WP_018125050.1
          Length = 559

 Score =  484 bits (1246), Expect = e-141
 Identities = 257/554 (46%), Positives = 352/554 (63%), Gaps = 12/554 (2%)

Query: 1   MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDAL-YDGGVEHLLCRHEQGAAMAAIGYAR 59
           M GA+ ++  L  Q + TV G PGG  +P+YDAL     + H+L RHEQGAA  A G AR
Sbjct: 4   MTGAELLIRLLERQEITTVAGIPGGTNLPIYDALGRSSRIRHVLARHEQGAAFMAQGMAR 63

Query: 60  ATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSL 119
           +TGK  VC+ATSGPGATNL+T +ADA LDS+P+V ITGQV    +GTDAFQE+D+ G+S+
Sbjct: 64  STGKPAVCMATSGPGATNLLTAIADAKLDSVPIVCITGQVPLGLVGTDAFQEMDIYGMSI 123

Query: 120 ACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASG--DLEPWFTTVEN 177
             TKH++LV+S  EL  ++ EAF +A SGRPGPVLVDIPKDIQ  S   D+ P   T E 
Sbjct: 124 PVTKHNYLVRSARELLHVIPEAFRIAASGRPGPVLVDIPKDIQCQSVTFDMLPAPGTPE- 182

Query: 178 EVTFPHAEVEQ---ARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGL 234
             T P  +++Q   A +M+++++KP+LY+GGGV  + A            +P+  TL GL
Sbjct: 183 --TSPDPDIDQLNRAAEMISRSRKPILYLGGGVTQSGASETATRLAEKNTLPSVMTLMGL 240

Query: 235 GAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMD 294
           GA+   +P  LGMLGMH  K  N A+QECDLLIA G RFDDR TG+L  F P A +IH+D
Sbjct: 241 GAMPHSHPLSLGMLGMHAAKHTNLALQECDLLIAAGVRFDDRATGRLEEFCPDADIIHID 300

Query: 295 IDPAEMNKLRQAHVALQGDLNALLPALQ---QPLNQYDWQQHCAQLRDEHSWRYDHPGDA 351
           IDP+E+ KL+   V +  D+   L  L    Q   + +W    A L+ +           
Sbjct: 301 IDPSELGKLKTDCVGIVCDVKTALEHLLANVQDKQRGEWVDRIATLKRDFPALLPKTASP 360

Query: 352 IYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAV 411
           +    L++  ++    D +VTTDVGQHQM AAQ    TR   F+TS GLGTMGFGLPAA+
Sbjct: 361 LSPYGLVRHAAEYVGPDAIVTTDVGQHQMRAAQAYPVTRARQFLTSGGLGTMGFGLPAAI 420

Query: 412 GAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQE 471
           GA +A P+ +V+C +GDGS +MN+QEL T     L +KIVL DN+ LG+V+Q Q+LF++ 
Sbjct: 421 GAALAHPDRSVICFTGDGSLLMNIQELATAAEHNLNIKIVLADNRALGLVQQQQELFYEN 480

Query: 472 RYSETTLTDNPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVW 531
           R   ++  +  DF  +A  FGI    +   +   + L  +L S+GP L+ + ++  ENV+
Sbjct: 481 RKFASSYGNALDFTTIAKGFGIASADLANSEDPASDLRDILGSNGPALIRIPVNAAENVY 540

Query: 532 PLVPPGASNSEMLE 545
           P+VPPGA+N+ M+E
Sbjct: 541 PMVPPGAANTTMIE 554


Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 815
Number of extensions: 39
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 559
Length adjustment: 36
Effective length of query: 512
Effective length of database: 523
Effective search space:   267776
Effective search space used:   267776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_018125050.1 B149_RS0109980 (acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.12560.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12560.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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