Alignments for a candidate for asp-kinase in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_018231020.1 THITHI_RS0100065 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000378965.1:WP_018231020.1
          Length = 409

 Score =  599 bits (1545), Expect = e-176
 Identities = 308/406 (75%), Positives = 357/406 (87%), Gaps = 1/406 (0%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           MALIVQK+GGTSVGS+ERI+ VAEKV +HR  G D+VVV+SAMSGET+RL+ LA++I  +
Sbjct: 1   MALIVQKYGGTSVGSVERIQHVAEKVLEHRRQGHDVVVVVSAMSGETDRLLGLAREINPR 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
           P  RELDV++STGEQVTIALL+MAL  RG PA SYTG QV ILTDS+HNKARI  ID  +
Sbjct: 61  PQGRELDVLLSTGEQVTIALLSMALEGRGCPARSYTGAQVHILTDSAHNKARIRDIDGAR 120

Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           +R DL +G VVVVAGFQGVDEHG+ITTLGRGGSDTT VALAAALKADECQIYTDVDGVYT
Sbjct: 121 VRRDLADGNVVVVAGFQGVDEHGNITTLGRGGSDTTAVALAAALKADECQIYTDVDGVYT 180

Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLI 240
           TDPRVVP+ARRLE+ITFEEMLEMASLGSKVLQIR+VEFAGKYNVPLRVL SF+EGPGTLI
Sbjct: 181 TDPRVVPEARRLERITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLSSFREGPGTLI 240

Query: 241 TIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAH 300
           T  EE+ MEQ +ISGIAFN++EA+LTI GVPD PGVA +ILGPIS +N+EVDMIVQNV  
Sbjct: 241 TF-EEDGMEQALISGIAFNQNEAQLTILGVPDQPGVAHRILGPISDANVEVDMIVQNVGA 299

Query: 301 DNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCM 360
           D TTDFTFTVHRN+Y+KA ++L+  + E+ AR++ GD KI K+S+VGVGMRSHAG+AS M
Sbjct: 300 DETTDFTFTVHRNDYDKALAILQGLSGELAARKISGDPKIVKISLVGVGMRSHAGIASRM 359

Query: 361 FEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLDAP 406
           FEALA+E INI+MISTSEIKVSVV++EKYLEL VRALH AF+L+ P
Sbjct: 360 FEALAREGINIRMISTSEIKVSVVVDEKYLELGVRALHDAFELENP 405


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 581
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 409
Length adjustment: 31
Effective length of query: 380
Effective length of database: 378
Effective search space:   143640
Effective search space used:   143640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_018231020.1 THITHI_RS0100065 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.1197.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1197.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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