Alignments for a candidate for dapC in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align N-succinyldiaminopimelate-aminotransferase (EC 2.6.1.17) (characterized)
to candidate WP_018231140.1 THITHI_RS0100675 succinyldiaminopimelate transaminase

Query= metacyc::MONOMER-6501
         (397 letters)



>NCBI__GCF_000378965.1:WP_018231140.1
          Length = 398

 Score =  416 bits (1068), Expect = e-121
 Identities = 222/398 (55%), Positives = 267/398 (67%), Gaps = 4/398 (1%)

Query: 1   MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60
           MNP LD L PYPF+KL  L A    P  D   I LSIGEP H APA + +A++++L GL+
Sbjct: 1   MNPDLDRLQPYPFQKLAELKAGITPPA-DREHIALSIGEPGHPAPAFIAEALSSHLHGLA 59

Query: 61  VYPSTKGEPALRQAISQWLSRRYSIPAP--DPESEVLPVLGSREALFAFAQTVIDPSAGA 118
            YP T+GE  LR+AI+ W +RR+ +PA   DP   VLPV G+REALFA AQ V+D ++  
Sbjct: 60  RYPLTRGEDTLREAIAAWTARRFDLPADSLDPARHVLPVNGTREALFALAQCVVDRTSRP 119

Query: 119 LVVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPGNP 178
           LVV PNPFYQIYEGAALLAGA P+Y+N      F      VP  VW R QL+++CSPGNP
Sbjct: 120 LVVMPNPFYQIYEGAALLAGAEPHYLNLTARNRFLPDLEAVPASVWARCQLLYLCSPGNP 179

Query: 179 AGNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTNLV 238
            G VM     R   EL++RH FVIAA ECYSEI+    TPP G L AA R+G   Y   V
Sbjct: 180 GGAVMDEASLRLAIELAERHDFVIAADECYSEIHFPGSTPPPGLLGAAARMGNSGYRRCV 239

Query: 239 AFSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAWSMRRMCRK 298
            F SLSKRSNVPG+RSGFVAGDA +L RF LYRTYHG +M+P   AAS AAWS      +
Sbjct: 240 VFHSLSKRSNVPGLRSGFVAGDAGILERFHLYRTYHGCSMAPPTQAASRAAWSDETHVEE 299

Query: 299 TAQ-YRAKFEAVLPILQNVLDVRAPQASFYLWAGTPGSDTAFARELYGRTGVTVLPGSLL 357
             + Y  KF+A+L IL +VL+V+ P A FYLW  TP  D  FAREL+ R  VTVLPGS L
Sbjct: 300 NRRLYARKFDAMLEILGDVLNVQRPDAGFYLWPETPVDDDRFARELFARENVTVLPGSYL 359

Query: 358 AREAHNANPGQGRIRIALVAPLDQCVQAAERIAHFART 395
           +R    ANPG  R+R+ALVAPLD+C++AA RI  F  T
Sbjct: 360 SRSTDGANPGAHRVRMALVAPLDECIEAAGRIRRFMET 397


Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 581
Number of extensions: 32
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 398
Length adjustment: 31
Effective length of query: 366
Effective length of database: 367
Effective search space:   134322
Effective search space used:   134322
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_018231140.1 THITHI_RS0100675 (succinyldiaminopimelate transaminase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.26901.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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