Alignments for a candidate for dapC in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_018231476.1 THITHI_RS0102405 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_000378965.1:WP_018231476.1
          Length = 360

 Score =  421 bits (1083), Expect = e-122
 Identities = 213/362 (58%), Positives = 259/362 (71%), Gaps = 2/362 (0%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           M ++FNFS+GPAMLP  VL+QA+ E+ DWNG G SVME+SHRGK F+ +AE AE+D R L
Sbjct: 1   MTRVFNFSAGPAMLPEPVLEQARDEMLDWNGTGMSVMEMSHRGKAFMSIAEAAERDLRVL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           + +P +YKVLF  GG   QFA VP+N+L  +T  DYV+ G W+  AI EA+++   NV  
Sbjct: 61  MGIPDDYKVLFLQGGASAQFAMVPMNLLRGRTRVDYVNTGAWSGKAIAEARRFADVNVV- 119

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL 180
           A     G  A+     WQ +D+AAY+HY PNETI G+     PD G DV + AD SSTIL
Sbjct: 120 ATGEDSGFNAIPAFESWQRTDDAAYLHYTPNETIGGVEFHWIPDTG-DVPLVADMSSTIL 178

Query: 181 SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT 240
           SRP+DVSRYGVIYAGAQKNIGPAGLTI IVREDL+G+   + P++ DY    ++GSM+NT
Sbjct: 179 SRPVDVSRYGVIYAGAQKNIGPAGLTIAIVREDLIGEVVPSTPTMFDYKTHAESGSMYNT 238

Query: 241 PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV 300
           PPT+ WYL+GLVFKWL   GG+  M  IN++KAE LY  ID SDFY N V  A RS MNV
Sbjct: 239 PPTYGWYLAGLVFKWLLGMGGLEAMAGINRRKAEKLYAAIDGSDFYTNPVNPACRSWMNV 298

Query: 301 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360
           PF LA+  LD  FL+E+ A GL  LKGHR VGGMRASIYNAMP  GV AL DFM +FE+R
Sbjct: 299 PFTLANPDLDGEFLKEAAALGLTTLKGHRSVGGMRASIYNAMPEAGVSALVDFMADFEQR 358

Query: 361 HG 362
            G
Sbjct: 359 KG 360


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 419
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 360
Length adjustment: 29
Effective length of query: 333
Effective length of database: 331
Effective search space:   110223
Effective search space used:   110223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_018231476.1 THITHI_RS0102405 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.15508.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15508.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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