Alignments for a candidate for cmutase in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_018231478.1 THITHI_RS0102415 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000378965.1:WP_018231478.1
          Length = 362

 Score =  440 bits (1131), Expect = e-128
 Identities = 222/365 (60%), Positives = 270/365 (73%), Gaps = 3/365 (0%)

Query: 1   MSEADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWV 60
           MSE D L+ +R RID+LDER++ LISERARCAQ VARVK A  P+AE   FYRP+REA +
Sbjct: 1   MSEQDSLETIRARIDALDERLVKLISERARCAQAVARVKRAGDPRAE---FYRPDREARI 57

Query: 61  LKHIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVI 120
           L+ I E+N GPLD+EEM RLFREIMS+CLALE+PL+VA+LGPEGTF+QAAALKHFGHSV 
Sbjct: 58  LRRIQEMNPGPLDDEEMGRLFREIMSACLALEEPLKVAFLGPEGTFTQAAALKHFGHSVT 117

Query: 121 SKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHL 180
           + P+ AIDEVFREV +GA ++GVVPVENS EG V HTLD F++  + ICGEV LRIHH L
Sbjct: 118 TVPLGAIDEVFREVESGAAHYGVVPVENSAEGVVTHTLDRFMQSPLSICGEVALRIHHQL 177

Query: 181 LVGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIA 240
           L  E  +  RI R+YSH QSLAQCR+WLDA+ P  ER+ VSSNA AA+R   E   AAIA
Sbjct: 178 LAAEPMERGRIERVYSHQQSLAQCREWLDANLPQAERIPVSSNAAAARRAAEEKGVAAIA 237

Query: 241 GDMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELL 300
            + AA+ YGL  +   IED P N+TRFL+IG     P+G DKTS+++S  N+PG+L  LL
Sbjct: 238 SEAAAERYGLHTINANIEDSPDNTTRFLVIGRSASGPSGHDKTSLLLSTSNRPGSLFRLL 297

Query: 301 MPFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSY 360
            PF    + LTRIE+RPS    W YVFFID  GH  D  +   +E +  EA  +KVLGSY
Sbjct: 298 EPFARADVSLTRIESRPSHCVNWDYVFFIDVEGHEDDDKVSKAIEAVRKEADLVKVLGSY 357

Query: 361 PKAVL 365
           P+AVL
Sbjct: 358 PRAVL 362


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 417
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 362
Length adjustment: 29
Effective length of query: 336
Effective length of database: 333
Effective search space:   111888
Effective search space used:   111888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_018231478.1 THITHI_RS0102415 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.13646.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13646.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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