Alignments for a candidate for hisC in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) (characterized)
to candidate WP_018231479.1 THITHI_RS0102420 histidinol-phosphate transaminase

Query= metacyc::BSU22620-MONOMER
         (360 letters)



>NCBI__GCF_000378965.1:WP_018231479.1
          Length = 373

 Score =  291 bits (744), Expect = 2e-83
 Identities = 158/359 (44%), Positives = 218/359 (60%), Gaps = 5/359 (1%)

Query: 7   LKQLKPYQPGKPIEAVKSEYGLDKVVKLASNENPYGCSEAAKEALHHEIQQLALYPDGYS 66
           ++ L PYQPGKPI+ ++ E G+ + VKLASNENP G    A +A   ++  +ALYPDG  
Sbjct: 13  VQNLTPYQPGKPIDELERELGIRESVKLASNENPLGPGVRALDAARAQLSGVALYPDGNG 72

Query: 67  AALRTRLSKHLNVSETSLIFGNGSDEIIQIICRAFLNDKTNTVTAAPTFPQYKHNAVIEG 126
            AL+ RL+++LNV  T +  GNGS+EI+++I RAFL    N V +A  F  Y       G
Sbjct: 73  FALKRRLAEYLNVDATRITLGNGSNEILELIARAFLAPGRNAVFSAHAFAVYPIVVQAVG 132

Query: 127 AEVR-EIALRPDG----SHDLDAMLEAIDEQTQVVWICSPNNPTGTYTSEGELLAFLERV 181
           AE R  +A  PD      HDLDAM   ID  T+VV++ +PNNPTGT+  E  + AFL+RV
Sbjct: 133 AEARVAVANGPDHVLPWGHDLDAMAALIDGDTRVVFVANPNNPTGTWLDEASVHAFLKRV 192

Query: 182 PSRVLVVLDEAYYEYVTAEDYPETVPLLSKYSNLMILRTFSKAYGLAALRVGYGIADENL 241
           P   L V+DEAY+EY   + YP+    L  + NL++ RTFSK +GLA LR+GYG++ E +
Sbjct: 193 PEDTLAVMDEAYFEYAEVDGYPDATRWLDAFPNLIVTRTFSKIHGLAGLRIGYGVSGEAV 252

Query: 242 IRQIEPAREPFNTSRLGQAAAIAALDDQAFIASCVEQNNAGLQQYYDFAKTHGLKCYPSQ 301
              +   R+PFNT+ L QAAA+AALDD   +   V+ N  GL+Q        GL   PS 
Sbjct: 253 ADILNRVRQPFNTNSLAQAAALAALDDADHVRRSVQVNREGLRQLTAACGQRGLGFIPSV 312

Query: 302 TNFVLIDFKRPADELFQALLEKGYIVRSGNALGFPTSLRITIGTKEQNEEILAILAEIL 360
            NF+ ID  R A  +++ALL +G IVR     G P  LR+T+G + +N   +  L ++L
Sbjct: 313 GNFLSIDVGREAAPVYEALLRQGVIVRPIAGYGLPNHLRVTVGREHENRRFIDALDKVL 371


Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 360
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 373
Length adjustment: 30
Effective length of query: 330
Effective length of database: 343
Effective search space:   113190
Effective search space used:   113190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_018231479.1 THITHI_RS0102420 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.7753.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7753.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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