Alignments for a candidate for argI in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_018232268.1 THITHI_RS0106510 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000378965.1:WP_018232268.1
          Length = 300

 Score =  402 bits (1034), Expect = e-117
 Identities = 200/299 (66%), Positives = 233/299 (77%)

Query: 1   MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60
           M+VRHFLS +D S EEL GLI R  ELK L   G  +E L+ +VLGM+FEK+STRTR+SF
Sbjct: 1   MTVRHFLSLLDLSTEELRGLIARAIELKRLHRSGTEHESLRGKVLGMIFEKSSTRTRVSF 60

Query: 61  EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120
           E GMIQLGGQA+FLSPRDTQLGRGEPI D+ARV+SRM+DGVMIRT+ H  +  FAAHS+V
Sbjct: 61  EVGMIQLGGQALFLSPRDTQLGRGEPIEDTARVLSRMVDGVMIRTYEHEKIERFAAHSRV 120

Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180
           PVINGL+D  HPCQLLAD+QT+ EHRG I G+ V ++GDGNNMCNSYI AA    F LR 
Sbjct: 121 PVINGLTDLEHPCQLLADLQTWFEHRGDITGRVVTYVGDGNNMCNSYINAAQLLGFTLRA 180

Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240
           ACPEGY+P  E V  AGD + VVRDP EAV  A LV TDVWASMGQEDE  AR   F  Y
Sbjct: 181 ACPEGYDPDPELVRAAGDAVSVVRDPAEAVRNADLVVTDVWASMGQEDEQTARRQAFTDY 240

Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299
            V++AL+  A  + LFMHCLPAHR EE+S E+L+ P+SV WD+AENRLHAQKALLE L+
Sbjct: 241 VVDSALMKRANPEALFMHCLPAHREEEVSTEVLEGPQSVVWDEAENRLHAQKALLEFLL 299


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 317
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 300
Length adjustment: 27
Effective length of query: 278
Effective length of database: 273
Effective search space:    75894
Effective search space used:    75894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_018232268.1 THITHI_RS0106510 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.26357.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26357.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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